Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0501 ATGACCACTTCTTTCTCTGACCTTCTTTCTTCTCCCACCACCGACCACAACCTCGGAGTTTCCGAAAGACCTCATCTTAAGTCGTCCTCGTCGGATCAAGCAGGTTCTTCTGGTGGTGTGCCGAAATTCAAGTCCACACCCCCTCCTTCTCTCCCTCTTAGCCATCATCTTCCACCAATATTTTCTCCTTCTTCTTACTTTAACTTTAACATTCCTCATGGGTTAAGCCTTGCTGAACTACTTGACTCCCCAGTTCTCCTTAACTCTTCCAACGTTTTGCCATCTCCAACAACTGGATCATTTGCTGGTCAAGGCTTCAACTGGAAGAGCAGTTATGGGGAAAGCCAGCAGCATGTCAAAGAAGAAGACAAGAGCTTCTCAAGTTTCTCCTTTCAAACACAAACACACCCTCCTCTTCCATCTTCAAATGGATTTCAATCTTCAACCGGCGTAGTTCAAACCGGATGGAGTTTTCCAGAAATTGCTAAACAAGATGGTTTTGCCTCAAGAATGAGTATGAGCATGGTGAAAACTGAAACCACTTCTGCGATGCAGAGTTTCAACTCTGAGAATAATAACCACAGGAATGGTTTTCAATCAGATCATAAAAATTACCAACCACCACAAGTTCAGACCTTAAGCAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGACAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCTAATTGTCCAACAAAGAAAAAAGTTGAGAGATCCTTAGATGGACAAATTACTGAGATAGTTTACAAAGGCACTCATAACCATCCCAAGCCTCAAGCTGCGAAGAGGAACTCATTGTCTGCCTCATCACTTGCAATTCCTCATTCAAATCATGGCGGCATTAATGAACTACCACATCAAATGGATTCGGTTGCCACTCCTGAAAACTCATCAATATCAATGGAAGATGATGATTTTGATCATACTAAATCAGGAGGAGATGAGTTTGATAATGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATGCCAGCTATAGAAAGTAGAACAGTGAGAGAACCCAGAGTTGTGTTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGGTGGAGGAAATACGGGCAGAAAGTGGTCAAGGGAAATCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCTGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACAAGACCTAAGGGCAGTGATCACAACCTATGAGGGAAAACACAACCATGACGTGCCTGCAGCACGTGGAAGTGGCAACAACTCTATGAATAGATCATTGCCAATAACCAATACCACAAACAACACTAGTGCAGCAACTTCTCTATACACTAATAACAATTATCTTCAGAGTCTTAGACCACCAGCAGCACCAGAAAGGACATCATCACATTTCAACCCCAACATGCAGCAGAGTTCATCAGGAAGTTTTGGATTCTCAGGGTTTGGAAATCCATTAATGGGGTCTTACACGAATCAACAATCTGACAATGTTTTCATCACTAGAGCCAAAGAGGAGCCTGGAGATGACTCGTTTCTTGACTCTTTCCTATGCTAA 1629 0.4273 MTTSFSDLLSSPTTDHNLGVSERPHLKSSSSDQAGSSGGVPKFKSTPPPSLPLSHHLPPIFSPSSYFNFNIPHGLSLAELLDSPVLLNSSNVLPSPTTGSFAGQGFNWKSSYGESQQHVKEEDKSFSSFSFQTQTHPPLPSSNGFQSSTGVVQTGWSFPEIAKQDGFASRMSMSMVKTETTSAMQSFNSENNNHRNGFQSDHKNYQPPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGTHNHPKPQAAKRNSLSASSLAIPHSNHGGINELPHQMDSVATPENSSISMEDDDFDHTKSGGDEFDNDEPDAKRWRIEGENEGMPAIESRTVREPRVVFQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASQDLRAVITTYEGKHNHDVPAARGSGNNSMNRSLPITNTTNNTSAATSLYTNNNYLQSLRPPAAPERTSSHFNPNMQQSSSGSFGFSGFGNPLMGSYTNQQSDNVFITRAKEEPGDDSFLDSFLC* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0501 542 MobiDBLite consensus disorder prediction 1 40 - -
Gso18g0501 542 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 26 470 IPR044810 GO:0003700
Gso18g0501 542 Pfam WRKY DNA -binding domain 218 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 Pfam WRKY DNA -binding domain 378 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 ProSiteProfiles WRKY domain profile. 372 437 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 ProSiteProfiles WRKY domain profile. 218 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 MobiDBLite consensus disorder prediction 187 221 - -
Gso18g0501 542 MobiDBLite consensus disorder prediction 126 146 - -
Gso18g0501 542 MobiDBLite consensus disorder prediction 112 146 - -
Gso18g0501 542 MobiDBLite consensus disorder prediction 292 339 - -
Gso18g0501 542 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 26 470 - -
Gso18g0501 542 MobiDBLite consensus disorder prediction 1 51 - -
Gso18g0501 542 SUPERFAMILY WRKY DNA-binding domain 369 437 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 Gene3D WRKY domain 206 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 MobiDBLite consensus disorder prediction 319 339 - -
Gso18g0501 542 SUPERFAMILY WRKY DNA-binding domain 216 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 Gene3D WRKY domain 364 430 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 SMART WRKY_cls 217 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 SMART WRKY_cls 377 436 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso18g0501 542 MobiDBLite consensus disorder prediction 187 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0501 Gso-Chr18 5037758 5041353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0501 40 541 WRKY Transcription Factor Family AT2G38470 43.985 1.16e-105 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso18g0501 WRKY 1.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0501 K13424 - gmx:100127397 1052.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0501 18 5037758 5041353 Gso14g1688 14 48982931 48986328 PCT
Gso18g0501 18 5037758 5041353 Gso2g1975 2 44147417 44150846 PCT
Gso14g1688 14 48982931 48986328 Gso18g0501 18 5037758 5041353 PCT
Gso2g1975 2 44147417 44150846 Gso18g0501 18 5037758 5041353 PCT