Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0496 ATGGAGATTGAAGCCGACGCAAGAGATAGTTCTCTCGTTCTGCTCAAGCAAGGAGCTGAAGCTAGGGTTTTTGAGTCTTCTTTTGTGGGAAGGAAATCTGTTGTCAAGGAACGCTTCTCAAAGAAGTACAGGCATCCAACTTTGGATTCAAAATTGACCCTCAAGCGCTTAAATGCGGAGGCAAGGTGCATGACCAAAGCAAGGCGACTTGGGGTTTGTACTCCTGTGCTGTATGCTGTGGATCCTGCTTTGCACACGTTAACATTTGAATATGTTGAGGGCCCTTCTGTCAAAGATGTGTTTCTTGAATTCAGGTCACATGTTGTCAATAAAGAGTGGCTGGATGATATTGCATCCCAAATTGGTGATGCAATTGGAAAGCTACATGATGGTGGTCTTATTCATGGTGATTTAACAACATCAAATATGTTACTGAAGAGTGATACAAAGCAGTTGGTTCTTATCGATTTTGGTTTGAGCTTCACTTCAACTCTACCAGAAGATAAGGCTGTTGATTTGTATGTTCTGGAAAGAGCTCTTATTTCAATGCATTCGTCATGTGGGAATGTGATGGATCAGATACTTGCTGCATACAGGAAGTCATCAAAGCAATGGTCATCCACATTGAACAAACTTGCACAAGTGCGACAAAGAGGACGGAAGAGGACCATGGTTGGATGA 681 0.4258 MEIEADARDSSLVLLKQGAEARVFESSFVGRKSVVKERFSKKYRHPTLDSKLTLKRLNAEARCMTKARRLGVCTPVLYAVDPALHTLTFEYVEGPSVKDVFLEFRSHVVNKEWLDDIASQIGDAIGKLHDGGLIHGDLTTSNMLLKSDTKQLVLIDFGLSFTSTLPEDKAVDLYVLERALISMHSSCGNVMDQILAAYRKSSKQWSSTLNKLAQVRQRGRKRTMVG* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0496 226 CDD PKc 17 160 - -
Gso18g0496 226 SUPERFAMILY Protein kinase-like (PK-like) 14 174 IPR011009 -
Gso18g0496 226 Pfam Protein kinase domain 39 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0496 226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 133 145 IPR008266 GO:0004672|GO:0006468
Gso18g0496 226 Gene3D Phosphorylase Kinase; domain 1 20 92 - -
Gso18g0496 226 Gene3D Transferase(Phosphotransferase) domain 1 105 223 - -
Gso18g0496 226 TIGRFAM arch_bud32: Kae1-associated kinase Bud32 15 220 IPR022495 GO:0004674
Gso18g0496 226 SMART serkin_6 9 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0496 226 PANTHER EKC/KEOPS COMPLEX SUBUNIT BUD32-LIKE ISOFORM X1 1 226 - -
Gso18g0496 226 ProSiteProfiles Protein kinase domain profile. 9 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0496 226 PANTHER O-SIALOGLYCOPROTEIN ENDOPEPTIDASE 1 226 IPR022495 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0496 Gso-Chr18 4999576 5003218 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0496 2 160 MAP Kinase Kinase Kinase AT5G66710 28.221 1.18e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso18g0496 Pkinase 4.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0496 K08851 - gmx:100782376 444.121