Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0486 ATGGGTGTTATGGAGATATCATTGTTAAAAATGATCGTAAATGGAATGTCCTCATTTTTGCATTTATCTTTTTCTGGAAACATGAACTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACATAAGTTGTTGAAGCCAATCATTGATGCAATTGTTAATCCTGAGTTAGCTTCTGATGAAGTGCTTAATAAGATATTGGAAGAAATTGGTTTTGCTGTTAATGAGTTAAAGGAGCATGTTGAGAACTGGCACCTATTATCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGATTCTCAGCATTGTCTCCCTGATGAATTAAGTTCTGAATATTTACAGCTCTGTTCACAAAAACTTAAGCTTTTGGGACATGAAGAAATCTCCCCAGTCATTAAGGAAGCTATTACAGAACACTTGGAAAATGTAGGACCCAGTTCAGAGCTCCTGACAAAAATAGCTGATAGCCTGGGCCTAAGGTCTAATCAGGAGGTTCTTATTGAGGCAGTGGCCCTCGAAAGGTTGAAGGAGAATGCTGAACAAACTGAAAAGACTGCAGAAGCTGAATTCATTGATCAAATGATTGCTGTTGTAACGCGAATGCATGAGCGTCTTGTTATGCTTAAACAAGCCCAGAGTAGCAGCCCAGTTTCAATACCTGCTGATTTTTGTTGTCCTCTTTCTTTGGAGTTGATGACTGATCCCGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGTCAGACTCTGGTTCATACCCACTTAATACCTAATTATACTGTAAAAGCACTAATTGCAAATTGGTGTGAATCAAACAATGTGCAACTGGTTGATCCCACAAAATCCACAAATTTAAATCAAGCATCTGTCCTTCATGGTTATATGGAATCTGGTACAACCAGGGAATCACCTGTTTTTGCTCATTCCAGGAGCAACCAGCCATCCTCACCTGAGTCAGCACGTTCTCGTTCTTTTAGTTCACCAGCTAATAACTTAACTTCTGGTGGAACTCAGCGAGAGGGAACATCACCTTTGCATCCCCGTTCAACTTCAGAAGGCTCCTTCAGAGGTATGGTTAATGGGCAATATATGGATCTTGCTAGAATATCTCCTGAAGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCAGTGTGGATTCAGCTAGCCATCCATCAATGTCACCATCTAGAAGGGAATCTTCCAGTGCCTTCAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGATTCCAGTGCACTTTCTAATGCAAATTTTCCCCAAGAAACACAAGATGATGACAACAATGCTCCTCAGCTGTCAACAAGTGCAGGGCACAGTAGAGAAGCTTCTGGTGAATTAAATCCAGGGACAGAAACTGGTGGTACTACTGCCGTGCCATCAGTGCATAGAGAACCTGAGTTCCCACTCCGATTGGAGACAAGGTCTCGAAGTCAAGCCATTTGGAGGCGGCCATCAGAGAGGCATGTTCCTAGGATAGTATCTTCTCCTGTTGTTGAAACAAGAGCTGATCTTTCTGCTATTGAAACCCAGGTTCGGAATTTGGTTGAGGGGTTGAGGAGCTCTGATGTTGATACTCAGAGAGAGGCAACAGCAGAACTCCGCCTTCTTGCTAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGAGCCATTAACTTATTAGTTGATTTACTTCAATCAACTGATACAACAATCCAAGAAAATGCTGTTACTGCACTTCTAAACTTGTCAATCAATGATAACAACAAAACTGCAATTGCAAATGCTGGTGCAATTGAACCTCTGATTCATGTGCTTGAGACTGGGAGCCCAGAAGCCAAGGAGAATTCAGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCTATTGGACCACTGGTAGAATTATTGGGAAGTGGAACCCCTCGGGGAAAGAGAGATGCTGCCACTGCTTTATTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGACTTAATGGACCCAGCAGCTGGAATGGTTGACAAGGCGGTTGCCGTCTTAGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGATGAAGGTGGTATTCCTGTTCTGGTTGAGGTTGTGGAGTTGGGTTCTGCGAGAGGAAAGGAGAATGCAGCTGCAGCTCTTCTACATCTTTGCTTACATAGTCCCAAATTTTCAAGCAAGGTGCTTCAACAAGGAGCTGTCCCGCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCTCAGGCTCTCCTCAATCAATTTAAAAGTCAAAGACATGGGAGTTCTGGGAGGGGCTGA 2526 0.4291 MGVMEISLLKMIVNGMSSFLHLSFSGNMNSEPVSKYYQKAEEIHKLLKPIIDAIVNPELASDEVLNKILEEIGFAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKDSQHCLPDELSSEYLQLCSQKLKLLGHEEISPVIKEAITEHLENVGPSSELLTKIADSLGLRSNQEVLIEAVALERLKENAEQTEKTAEAEFIDQMIAVVTRMHERLVMLKQAQSSSPVSIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLVHTHLIPNYTVKALIANWCESNNVQLVDPTKSTNLNQASVLHGYMESGTTRESPVFAHSRSNQPSSPESARSRSFSSPANNLTSGGTQREGTSPLHPRSTSEGSFRGMVNGQYMDLARISPEGLDDRSASSDESSVDSASHPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSNANFPQETQDDDNNAPQLSTSAGHSREASGELNPGTETGGTTAVPSVHREPEFPLRLETRSRSQAIWRRPSERHVPRIVSSPVVETRADLSAIETQVRNLVEGLRSSDVDTQREATAELRLLAKHNMDNRIAIANCGAINLLVDLLQSTDTTIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIGPLVELLGSGTPRGKRDAATALFNLSIFHENKNRIVQAGAVRHLVDLMDPAAGMVDKAVAVLANLATIPEGRNAIGDEGGIPVLVEVVELGSARGKENAAAALLHLCLHSPKFSSKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFKSQRHGSSGRG* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0486 841 MobiDBLite consensus disorder prediction 409 518 - -
Gso18g0486 841 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Gso18g0486 841 MobiDBLite consensus disorder prediction 341 394 - -
Gso18g0486 841 Coils Coil 182 212 - -
Gso18g0486 841 SUPERFAMILY RING/U-box 229 316 - -
Gso18g0486 841 Gene3D - 541 836 IPR011989 -
Gso18g0486 841 SUPERFAMILY ARM repeat 558 830 IPR016024 -
Gso18g0486 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 598 640 IPR000225 GO:0005515
Gso18g0486 841 MobiDBLite consensus disorder prediction 420 504 - -
Gso18g0486 841 SMART arm_5 750 790 IPR000225 GO:0005515
Gso18g0486 841 SMART arm_5 710 749 IPR000225 GO:0005515
Gso18g0486 841 SMART arm_5 669 709 IPR000225 GO:0005515
Gso18g0486 841 SMART arm_5 587 627 IPR000225 GO:0005515
Gso18g0486 841 SMART arm_5 541 585 IPR000225 GO:0005515
Gso18g0486 841 SMART arm_5 628 668 IPR000225 GO:0005515
Gso18g0486 841 CDD RING-Ubox_PUB 243 285 IPR045210 -
Gso18g0486 841 MobiDBLite consensus disorder prediction 341 395 - -
Gso18g0486 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 320 IPR013083 -
Gso18g0486 841 Pfam Armadillo/beta-catenin-like repeat 628 667 IPR000225 GO:0005515
Gso18g0486 841 Pfam Armadillo/beta-catenin-like repeat 589 626 IPR000225 GO:0005515
Gso18g0486 841 Pfam Armadillo/beta-catenin-like repeat 671 708 IPR000225 GO:0005515
Gso18g0486 841 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 10 836 - -
Gso18g0486 841 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Gso18g0486 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 721 762 IPR000225 GO:0005515
Gso18g0486 841 PANTHER U BOX DOMAIN-CONTAINING 10 836 - -
Gso18g0486 841 Pfam U-box domain 239 309 IPR003613 GO:0004842|GO:0016567
Gso18g0486 841 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 680 722 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0486 Gso-Chr18 4880620 4888510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0486 199 841 U-box Gene Family AT2G23140 63.174 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0486 - - gmx:100811250 1564.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0486 18 4880620 4888510 Gso14g1706 14 49203007 49205999 PCT
Gso18g0486 18 4880620 4888510 Gso2g1991 2 44318952 44325630 PCT
Gso14g1706 14 49203007 49205999 Gso18g0486 18 4880620 4888510 PCT
Gso2g1991 2 44318952 44325630 Gso18g0486 18 4880620 4888510 PCT