Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0484 ATGGAGAGTAAGCCACATGTCTTAATGCAAAGATATGAGTTAGGAAGATTACTTGGCCAGGGAACCTTTGGAAAGGTTTACTATGCTAGGAGTACAATAACTAACCAGAGTGTGGCTATTAAAGTGATTGACAAAGATAAGGTTATGAGAACTGGGCAAGCTGAACAAATCAAGCGCGAAATATCTGTTATGAGACTGGCCAGGCACCCCAATATTATACAGCTTTTTGAGGTTTTGGCCAACAAGAGTAAGATTTACTTTGTTATAGAATATGCTAAAGGTGGCGAGCTCTTCAACAAGGTGGCCAAAGGAAAGCTCAAGGAAGATGTGGCACACAAGTATTTTAAGCAGCTAATCAATGCTGTAGATTATTGTCACAGTAGAGGCGTGTACCACCGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATCTAAAGGTTTCTGACTTCGGTTTAAGTGCTCTCGTTGATTCCAAGAGGCAGGATGGCTTACTCCATACACCTTGTGGCACACCTGCTTATGTTGCTCCCGAAGTCATCAAAAGGAAGGGATATGATGGTACCAAAGCTGATATATGGTCTTGTGGAATTGTTTTGTTTGTCTTGTTGGCAGGTTATCTCCCTTTTCACGACCCGAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCTAATTGGTTCCCACCAGAAGTATGTGAGCTATTGGGCATGATGTTGAATCCAAATCCTGAAACTAGGATTCCGATATCTACTATTAGAGAAAATAGTTGGTTTAAGAAAGGACAAAATATAAAAAACAAAAGACCTGTAGTGGAAAACAACACTGTCTCTTCTTCAAGTACTGTTCTTCTTGATCAAAATGATTGTGATGGTCTAGCAGCAGAAGCAAATGGGGAGTCAGTTGTGCCCTTAAGTATAAACGCCTTTGATATTATCTCCCGTTCTGTTGGTTTTGATCTTTCTAGATTCTTTGATGAAAGTTTTAAGAAAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCAAATGTCATCATCTCCAAGCTGGAAGACATTGCTAACCAACTGAGGATGAAAATAAAGAAAAAAGCTGCGGGTTTGTTGAAATTAGAGAGCCTCAATGAAGGTAGGAAGGGAGTTTTATCCATTGATGCAGAGATCTTTGAGGTTACACCTTGTTTCCATATGGTGGAGGTGAAAAAATCAAATGGAGATACATTGGAATATCAAAAGATATTGAAAGAGGATATTAGGCCTGCTCTTCAGGATATTGTTTGGATCTGGCAAAGTGACCAACAACTGCAATCACAACAGTCAGAGCAACAGCAACAGACAGATGACCAGCAGCAACAACAACCACAGTCATAA 1389 0.3952 MESKPHVLMQRYELGRLLGQGTFGKVYYARSTITNQSVAIKVIDKDKVMRTGQAEQIKREISVMRLARHPNIIQLFEVLANKSKIYFVIEYAKGGELFNKVAKGKLKEDVAHKYFKQLINAVDYCHSRGVYHRDIKPENILLDENGNLKVSDFGLSALVDSKRQDGLLHTPCGTPAYVAPEVIKRKGYDGTKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPEVCELLGMMLNPNPETRIPISTIRENSWFKKGQNIKNKRPVVENNTVSSSSTVLLDQNDCDGLAAEANGESVVPLSINAFDIISRSVGFDLSRFFDESFKKKEARFSSRLPANVIISKLEDIANQLRMKIKKKAAGLLKLESLNEGRKGVLSIDAEIFEVTPCFHMVEVKKSNGDTLEYQKILKEDIRPALQDIVWIWQSDQQLQSQQSEQQQQTDDQQQQQPQS* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0484 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gso18g0484 462 Gene3D Transferase(Phosphotransferase) domain 1 3 309 - -
Gso18g0484 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0484 462 MobiDBLite consensus disorder prediction 443 462 - -
Gso18g0484 462 PANTHER - 2 452 - -
Gso18g0484 462 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Gso18g0484 462 SUPERFAMILY Protein kinase-like (PK-like) 8 291 IPR011009 -
Gso18g0484 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0484 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gso18g0484 462 CDD CIPK_C 315 429 - -
Gso18g0484 462 Gene3D Kinase associated domain 1, KA1 310 434 - -
Gso18g0484 462 Pfam NAF domain 311 369 IPR004041 GO:0007165
Gso18g0484 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0484 462 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0484 Gso-Chr18 4859471 4862829 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0484 1 439 CBL-interacting serine-threonine protein kinases AT5G58380 66.667 0.0 628
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso18g0484 Pkinase 5.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0484 - K07198 gmx:100790905 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0484 18 4859471 4862829 Gso2g1995 2 44374816 44377518 PCT
Gso2g1995 2 44374816 44377518 Gso18g0484 18 4859471 4862829 PCT