Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0480 ATGCCGGAGATCGACCAGGCGGCGGCGGCGGCGGAGGAAACCGCCCTGTTCGGAAAATACGAGCTGGGCCGCGTCCTCGGCTGCGGTGCCTTCGCCAAAGTCCACTACGCGCGCAACGTGCAAACGGGGCAGAGCGTGGCCGTGAAAATCATCAACAAGAAGAAACTCGCCGGAACCGGCCTCGTCGGAAACGTGAAGCGCGAAATCACGATCATGAGCAAGCTCCACCACCCCTACATAGTGCGCCTCCACGAAGTCCTCGCCACCAAGACCAAAATCTTCTTCATCATGGACTTCGTCCGCGGCGGCGAGTTATTCGCGAAAATCTCCAAGGGTCGCTTCGCCGAGGATCTCAGCCGCAAATACTTTCATCAATTGATCTCCGCCGTCGGGTACTGCCACTCGCGCGGCGTTTTCCACCGCGACCTCAAGCCGGAGAATCTCCTCCTCGACGAGAACGGCGATTTGAGGGTCTCGGATTTCGGGTTGAGTGCGGTTCGAGATCAGATCCGGCCCGATGGGCTGCTCCACACGCTTTGCGGAACCCCTGCTTACGTGGCACCTGAGATTTTAGGCAAAAAAGGTTACGATGGTGCCAAGGTTGATGTGTGGTCATGCGGCGTCGTTCTGTTCGTGCTCGCCGCGGGATACTTACCGTTCAACGACCCGAATTTGATGGTAATGTATAAGAAAATCTACAAAGGCGAGTTCCGGTGTCCGCGGTGGATGTCGCCGGAGCTCCGGCGATTCTTATCGAAGTTGCTCGACACGAACCCAGAAACGAGGATCACGGTTGATGGCATGACGCGGGACCCGTGGTTCAAAAAAGGGTACAAAGAATTAAAATTTCACGAAGAGGATTACCATGCAACCGGGTCGGGTTCGTTTTTCGGGCCGAAGGACGAGAGGGTGGTGGATTTGAACGCTTTTGATTTGATATGTTTTTCTTCGGGGTTGGATTTGTCGGGGATGTTTGGCGGGGAGTGGGGGGAGAGGTTGGTGACGCGGGAGCCGCCGGAGAGGGTTTTGGAGGCGGCGGAGGATGCGGGGGCGGCGGCGGGGATGGCGGTGCGGTGGAAGAAGGAGTGTGGGGTGGAGTTGGAAGGGATGAATGGGAGGTTTGGGATTGGGGTGGAGGTTTACCGGCTCACGGCGGAGCTCGCGGTGGTGGAGGTAAGGAAGAGGGGCGGCGACGCCGTGGCCGCGGCAGTGAGGGGTGTGTGGGAGGAGAGGTTGAAGCCTTTGTTGCTTGGGGGTGCAACCACGTCGTATAGTAGTGAGGAGGAACAACAACAACAACATCAAGAAGAAGAAGAACAACAAGAACTTGAGTCGCAGGTTGCCGGTGACTGA 1353 0.575 MPEIDQAAAAAEETALFGKYELGRVLGCGAFAKVHYARNVQTGQSVAVKIINKKKLAGTGLVGNVKREITIMSKLHHPYIVRLHEVLATKTKIFFIMDFVRGGELFAKISKGRFAEDLSRKYFHQLISAVGYCHSRGVFHRDLKPENLLLDENGDLRVSDFGLSAVRDQIRPDGLLHTLCGTPAYVAPEILGKKGYDGAKVDVWSCGVVLFVLAAGYLPFNDPNLMVMYKKIYKGEFRCPRWMSPELRRFLSKLLDTNPETRITVDGMTRDPWFKKGYKELKFHEEDYHATGSGSFFGPKDERVVDLNAFDLICFSSGLDLSGMFGGEWGERLVTREPPERVLEAAEDAGAAAGMAVRWKKECGVELEGMNGRFGIGVEVYRLTAELAVVEVRKRGGDAVAAAVRGVWEERLKPLLLGGATTSYSSEEEQQQQHQEEEEQQELESQVAGD* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0480 450 SUPERFAMILY Protein kinase-like (PK-like) 17 283 IPR011009 -
Gso18g0480 450 Pfam NAF domain 307 358 IPR004041 GO:0007165
Gso18g0480 450 CDD CIPK_C 308 416 - -
Gso18g0480 450 PANTHER - 1 443 - -
Gso18g0480 450 Gene3D Kinase associated domain 1, KA1 303 418 - -
Gso18g0480 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Gso18g0480 450 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Gso18g0480 450 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 443 - -
Gso18g0480 450 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0480 450 Coils Coil 424 446 - -
Gso18g0480 450 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0480 450 ProSiteProfiles NAF domain profile. 302 326 IPR018451 GO:0007165
Gso18g0480 450 Gene3D Transferase(Phosphotransferase) domain 1 10 296 - -
Gso18g0480 450 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0480 450 MobiDBLite consensus disorder prediction 419 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0480 Gso-Chr18 4834157 4836900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0480 1 417 CBL-interacting serine-threonine protein kinases AT2G30360 62.617 0.0 534
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gso18g0480 Pkinase 7.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0480 - K12761 gmx:100799169 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0480 18 4834157 4836900 Gso14g1715 14 49271918 49273924 PCT
Gso18g0480 18 4834157 4836900 Gso2g1997 2 44400635 44402502 PCT
Gso14g1715 14 49271918 49273924 Gso18g0480 18 4834157 4836900 PCT
Gso2g1997 2 44400635 44402502 Gso18g0480 18 4834157 4836900 PCT