Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0477 ATGGGTAATAACAGGTTCAGATTGTCAGATATGATGCCAAATGCATGGTTCTATAAGCTCAAAGATATGAGCAAATCAAGGAAGAGAAATGGCCCTCATGTTATGAAGAACAAAGTAGCCTCACCAACAACATCACAAAGGTCACAGCCAAGATACTCTCATTATTTCTCCATTGAACCAAACATAGCTGGTAAGTTATACAACTCTCCTATTTTTTACACCAAACACTCAGATAACACATTCACTGATTCACCAAGAAGGTCATCCAAGAGAAGGGCTGGGAGAAAAACCATTTATAAGCCTTCTCCAACAGTTGTGTCTTCACCCGTCATCGAAAGTTTTGGTTGTCATTCCACAAACAATTGGATTAAGCCAAATCAACTTCAGTCTCCAGACTATTATCTCTCCTCCATAGAGATTTCTTCTTCTGAATCAAACCTCAATGATGAATATGTTTCATCTGAGTCTGAGTGTGATAAGTTCACTATTCCTGACCTGCTTAATGGGGTAGCCTCTGAATGCAGTTGTAGAGTTAGCTCTTCCACCAATGACATCATCATTGACATGAAAAATGAACCCTTCAATGGAAATTCTGAAAACCTTGATGGCTTTGACACAATTTCACAATTGGGCCTTGCTCCAATATTAACAAAGCCAGTGAAGTTTGATGATAAGGTCATTGAAACCACTGAGTTGAGAAGATCAGCTAAATTTGATGAGCTGAAGTCTCATCAGTCTCTATCTGTCATAGTTAGCAAAGAGGAATGTAGTAGAACTAAGAGAGAAAGAAAAACAAGTCCAGTAGCTAGAATTTCCTCTGCTAATTCTCCAGGTATAAAACTTAGAGTCAATTCTCCAAAACTCGCAAGCAAGAAAGTTCAAGCCTATGCAAGGAGGAGTGTGTCATCCAGAGCATGCAAGGCCTCAATGAATTCAGGCTTTCCAGAGGGATTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGAGTCAATGGTGGAGATGATTGTGGAGAACAATATCCACGCATCGAAAGATTTGGAGAACTTGCTTGCCTGCTATCTCTCACTGAATTCAAGGGAATACCATGATCTTATTGTCAAAGCATTTGAGCAAATTTGGTATGACATGGCTCAACTCAGAATGTAA 1158 0.3964 MGNNRFRLSDMMPNAWFYKLKDMSKSRKRNGPHVMKNKVASPTTSQRSQPRYSHYFSIEPNIAGKLYNSPIFYTKHSDNTFTDSPRRSSKRRAGRKTIYKPSPTVVSSPVIESFGCHSTNNWIKPNQLQSPDYYLSSIEISSSESNLNDEYVSSESECDKFTIPDLLNGVASECSCRVSSSTNDIIIDMKNEPFNGNSENLDGFDTISQLGLAPILTKPVKFDDKVIETTELRRSAKFDELKSHQSLSVIVSKEECSRTKRERKTSPVARISSANSPGIKLRVNSPKLASKKVQAYARRSVSSRACKASMNSGFPEGFAVVKSSLDPQRDFRESMVEMIVENNIHASKDLENLLACYLSLNSREYHDLIVKAFEQIWYDMAQLRM* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0477 385 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 384 IPR038933 GO:0045892
Gso18g0477 385 Pfam DNA-binding domain 1 47 IPR025830 GO:0003677
Gso18g0477 385 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 384 - -
Gso18g0477 385 ProSiteProfiles OVATE domain profile. 320 379 IPR006458 -
Gso18g0477 385 MobiDBLite consensus disorder prediction 27 52 - -
Gso18g0477 385 MobiDBLite consensus disorder prediction 37 52 - -
Gso18g0477 385 MobiDBLite consensus disorder prediction 78 101 - -
Gso18g0477 385 Pfam Transcriptional repressor, ovate 324 380 IPR006458 -
Gso18g0477 385 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 318 380 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0477 Gso-Chr18 4789745 4791279 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Gso18g0477 Ovate 7.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0477 - - gmx:100798120 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0477 18 4789745 4791279 Gso14g1719 14 49312142 49313498 PCT
Gso18g0477 18 4789745 4791279 Gso2g2003 2 44460724 44462280 PCT
Gso14g1719 14 49312142 49313498 Gso18g0477 18 4789745 4791279 PCT
Gso2g2003 2 44460724 44462280 Gso18g0477 18 4789745 4791279 PCT