Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0476 ATGTATTCCAATAAAAGGTGTAAGGAGGATGGCAAAGCTGAGCCTCGTTACATCGAAACCGACCCAACTGGTAGATATGCTCGGGTTGGAGATATTCTAGGAAAAGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTACTTGGAATAGAAGTAGCATGGAGCCAGGTCAAACTCAACGAGGCACTTCGCAAACCAGAAGACTTGGAGCGGCTTTATTTAGAGGTTCATCTCCTCAGCACTCTCAAGCACCAATCCATCATGAGATTCTACACGTCTTGGATTGATGTTGACAACAAGACCTTCAATTTCATTACAGAAATGTTTACTTCAGGGACACTGAGAGAATACAGGAAGAAATACAAGCACATAGGCCTACAAGCAATAAAGAGTTGGACTCGCCTAATCTTACAGGGTCTTGTTTATCTACATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAACATTTTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACCCCAGAGTTCATGGCACCAGAATTATATGAAGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTCTGGAAATGCTTACATCTGATTATCCATATAGTGAATGTGCTAACCCTGCACAGATATACAAGAAAGTGACATCGGGGAAGCTACCGGCATCATTTTTCAGGATTGAAGACACAGAAGCACAAAGGTTTATTGGCAAGTGTCTAATAACTGCAGCAAAGAGACCATCAGCTAAAGAATTGTTGAATGATCCATTTCTTTTGTCTGATGATGCATCATCCATGACAAAGATCGGAATTCAGAAACCCTTTTTAAATTACAATGAAATGGAAAAGCTTCAATTGGATGATGTTTCACCTAGGACTGAAATGTCAATAACTGGGAAGCTAAATCCAGAACATGATACTATCTTTCTCAAAGTGCAAATTTCCGACAAGGATGGTTCTTGTAGGAATGTATACTTTCCTTTTGACATATACACAGACACTCCCATTGATGTTGCAATGGAGATGGTGAAGGAATTGGAGATCACAGATTTGAAGCCTTCTGATATTGCAAATATGATTGAAGGAGAGATATCTGTGCTGCTGCCAAATAAGAGGAATAGTAACTGTTCAGTTATCACGATGACGACGACAACGAATCATCATTTCCACTCTGCCTCTTCTCGTTCATCATCCCAAGGATCAATATCAGGCTCAGACAGTAGAGCTGATGACTTATTGAATGGAGATTATTGGCTCCATGGTGATGTACTTGATGATGCCAGTTCAATATGCTCCTCACATGGGACATATTCCAACTCAAACTTTTGTTCAGTGGATGAGCAGGAGGAAAACCATAAGGCTTCTACAAGAAAAGATAAACATCTCATCATAAAGAGTCACATGTGCACAAGATTTTCCCCTAATGAAGACCCCATCACTTTGAACCAGTGCAAAGTTTTGGCAGGACCACAAGCACCTTCTACTAGCAAAAACAAGAGGATGATGGACAATCGTAGACTAACAAGGAACAAGTCATTGATTGATACAAGGAGCCAGCTACTACACAGATCACTGGTTGAGGAGGTGAACAAAAGAAGGCTATTCAACACAGTTGGAGCCGTGGAAAATATTGGATTTGTGACACCTTATGAGGTTACCAACAAAAAGTCACATCCAGCATGCGGTGCTTTTGATGTGAACTCTTCTAGAAGTAGCAAGAGAGAAAACTTTAATAGAGAGAAATTTTTTTAG 1833 0.4053 MYSNKRCKEDGKAEPRYIETDPTGRYARVGDILGKGAMKTVYKAIDEVLGIEVAWSQVKLNEALRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVDNKTFNFITEMFTSGTLREYRKKYKHIGLQAIKSWTRLILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECANPAQIYKKVTSGKLPASFFRIEDTEAQRFIGKCLITAAKRPSAKELLNDPFLLSDDASSMTKIGIQKPFLNYNEMEKLQLDDVSPRTEMSITGKLNPEHDTIFLKVQISDKDGSCRNVYFPFDIYTDTPIDVAMEMVKELEITDLKPSDIANMIEGEISVLLPNKRNSNCSVITMTTTTNHHFHSASSRSSSQGSISGSDSRADDLLNGDYWLHGDVLDDASSICSSHGTYSNSNFCSVDEQEENHKASTRKDKHLIIKSHMCTRFSPNEDPITLNQCKVLAGPQAPSTSKNKRMMDNRRLTRNKSLIDTRSQLLHRSLVEEVNKRRLFNTVGAVENIGFVTPYEVTNKKSHPACGAFDVNSSRSSKRENFNREKFF* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0476 610 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0476 610 SUPERFAMILY Protein kinase-like (PK-like) 28 286 IPR011009 -
Gso18g0476 610 PANTHER WNK KINASE 23 589 - -
Gso18g0476 610 Gene3D Transferase(Phosphotransferase) domain 1 110 293 - -
Gso18g0476 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Gso18g0476 610 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 23 589 - -
Gso18g0476 610 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0476 610 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0476 610 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Gso18g0476 610 MobiDBLite consensus disorder prediction 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0476 Gso-Chr18 4775052 4780587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0476 17 582 MAP Kinase Kinase Kinase AT5G58350 59.091 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gso18g0476 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0476 K08867 - gmx:100778102 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0476 18 4775052 4780587 Gso2g2004 2 44465625 44471130 PCT
Gso2g2004 2 44465625 44471130 Gso18g0476 18 4775052 4780587 PCT