Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0472 ATGACCCGGAGAAAGACGAAACTCACATTCATAGCCAATGATACTGAGAGGAAGACTTCATACAAGAAAAGGAAGAAGTCACTGCTGAAGAAGACGGAGGAACTTAGCACTCTTTGTGGCATTGAAGCATGTGCCATAGTTTATGGCCCCGATGATCCTCAGCCAGAGACTTGGCCATCCGAAGCGGGTGTCAAAAATGTGCTGGGAAAGTTCTCTACCATACCAGAATGGGAGCAGGGAAAGAAAATGGCGAACCAAGAGAGTTTCATTGCAGAAAGCATCCAGAAGGGCAGAGACAAGGTGAAGAAAATAGGGAAGGACAACAAAGAAAAGGAGATGACCATGTTCATGTATCAGTGCTTCAACACAGGTACTGTTCAGCCTGATAACAACATGGCCATAGCTGATTTGAATGTTCTTTCATCTGTGATTGAACAGAAGCTGAGGGACATTAGTAGAAGGATGGAAACGCTGAATGTTAACGAGACAACACCACAGCAACCCGAGATGCAAACACCAGCGCTTCCCGTAGCGCCTGAAGAGACAACGACGACACCGCTGAATTATGGCCATGATGAGTCGGATGTGAATGCTGACCCCTTGGAAAGCCAGTGGTTTATGGACTTGCTTAATGGTAATGGGGATGAGACACCAATGACTCCATTTGGAGATGTTAATCTCCCACTCTAA 690 0.4609 MTRRKTKLTFIANDTERKTSYKKRKKSLLKKTEELSTLCGIEACAIVYGPDDPQPETWPSEAGVKNVLGKFSTIPEWEQGKKMANQESFIAESIQKGRDKVKKIGKDNKEKEMTMFMYQCFNTGTVQPDNNMAIADLNVLSSVIEQKLRDISRRMETLNVNETTPQQPEMQTPALPVAPEETTTTPLNYGHDESDVNADPLESQWFMDLLNGNGDETPMTPFGDVNLPL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0472 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g0472 229 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Gso18g0472 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0472 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0472 229 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 172 - -
Gso18g0472 229 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso18g0472 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gso18g0472 229 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso18g0472 229 PANTHER MADS BOX PROTEIN 2 172 - -
Gso18g0472 229 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0472 Gso-Chr18 4687211 4688102 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0472 1 158 Type I MADS-box Gene Family AT5G48670 50.000 1.13e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g0472 SRF-TF 2.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0472 - - gmx:100795996 434.491