Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0471 ATGGCCCGGAAAAAGGTGAAACTAGCATTCATAGCCAACAATTCTAAAAGGAAGACAACATACAACAAAAGGAAGCAGTCACTGCTGAAGAAAACGGAGGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATGGCCCCAATGATCCTCGGCCAGAGATTTGGCCATCTGAATCGGGTGTCATAAATGTGCTGGGAAAGTTCAAAAGTATGCCTCAATGGGAGCAGACCAAGAAGATGGCGAACCAAGAGCGTTTCATTGCAGATAGCATCGTGAAGGGTAAAGAGAAATTGAAGAAGCTTGCGGATGAGAACAAGGAGAAGGAAATGTCCTTGTTCATGGTTCAGTGGCTTAAAACAGGGAAAGTTCAGCCTGAACATAACATGACCATGGCTGATTTCAATGTTCTTTCATCGATGATTGATCAAAATCTAAAGGACATTGCTAAAAAGATGGAAATGCTGAATGTTAATGAGGTGATACCAAACCAACCCCAGATGCAAACCCCAGCGTTCCAACCCGATATACCAACCTCATCATTCGAACCCCAGATGCAAAATCCATCATACCAACCCCAGATGCAAACACCAGCATTCCAAACCCTGATGCAAGCACCAGCATTGGTAGCATACCAACCCCAGATGCCAACACTAACACCTGAAGAAATGACACTGCTGAATAATGGCTATGGGTCCGATATGAATGCTAATCCCATGCAAAGCCAGGGATTTATGGACTGGCTTAATGGTAATGGGGATGACTAA 774 0.4419 MARKKVKLAFIANNSKRKTTYNKRKQSLLKKTEELSTLCGIEACAIVYGPNDPRPEIWPSESGVINVLGKFKSMPQWEQTKKMANQERFIADSIVKGKEKLKKLADENKEKEMSLFMVQWLKTGKVQPEHNMTMADFNVLSSMIDQNLKDIAKKMEMLNVNEVIPNQPQMQTPAFQPDIPTSSFEPQMQNPSYQPQMQTPAFQTLMQAPALVAYQPQMPTLTPEEMTLLNNGYGSDMNANPMQSQGFMDWLNGNGDD* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0471 257 PANTHER MADS BOX PROTEIN 2 244 - -
Gso18g0471 257 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso18g0471 257 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Gso18g0471 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gso18g0471 257 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 244 - -
Gso18g0471 257 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso18g0471 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g0471 257 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gso18g0471 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0471 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0471 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0471 Gso-Chr18 4678801 4679574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0471 1 180 Type I MADS-box Gene Family AT5G48670 44.751 2.42e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g0471 SRF-TF 5.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0471 - - gmx:100794935 522.702