Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0469 ATGGCCACAGGAAAGCTGAAACTCACATTCATAGCCAACGATTCTCAAAGAAAAACAGTATGCAAGAAAAGGAAGCAGTCACTGCTGAAGAAAACGGAGGAACTCAGCACCCTTTGTGGCATTGAAGCATGTGCTATAGTTTATGGCCCCAATGATCATCGGCCAGAGATCTGGCCATCTGAATCGGGTGTCAAAAATGTACTGGGAAAGTTCATGAACAAGCCACAATGGGAGCAAAGCAAAAAGATGATGAACCAAGAGAGTTTCATTGCACAAAGTATCATGAAGAGTAAAGACAAGTTACAGAAAGTTGTGAAGGAAAACAAGGAGATTGAAATGTCCTTGTTCATGGCTCAGTGCTTTCAGACAGGTATGTTTCAGCCTGATATCAATATGACCGCAGCTGATATGAATGTTCTTTCATCGGAGATTTAA 435 0.4161 MATGKLKLTFIANDSQRKTVCKKRKQSLLKKTEELSTLCGIEACAIVYGPNDHRPEIWPSESGVKNVLGKFMNKPQWEQSKKMMNQESFIAQSIMKSKDKLQKVVKENKEIEMSLFMAQCFQTGMFQPDINMTAADMNVLSSEI* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0469 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 CDD MADS_SRF_like 5 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso18g0469 144 PANTHER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE-RELATED 2 119 - -
Gso18g0469 144 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Gso18g0469 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g0469 144 PANTHER MADS BOX PROTEIN 2 119 - -
Gso18g0469 144 SUPERFAMILY SRF-like 4 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0469 Gso-Chr18 4665487 4665921 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0469 1 140 Type I MADS-box Gene Family AT5G48670 47.143 3.85e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g0469 SRF-TF 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0469 - - gmx:100794409 290.041