Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0468 ATGACTAGAAAAAAGGTGAAACTCGCATTCATAGGGAATGATGCTGCAAGGAGGGCAACATACAAGAAAAGGAAGAAGGGGATGCTGAAGAAGGTTGAGGAACTCAGCACCCTCTGTGGCATTGAAGCGTGTGCTATAGTTTATGGCCACAATGATCCTGAGCCAGAGGTTTGGCCATCCCATTGGGGAGTCCAAAGGGTGGTGGAAAAGCTCAGAACTATGCCTGAATTGGAACAACGAAAGAAAATGGTGAACCAGGAGGGTTTCATTGGACAAAAGATCCTGAAGGGTAACGAGAAGGTGATGAAGCTTATGAAGGACAATAGGGAGAAGGAGATAACCATGTTCTTGTTTCAATGCCTTAATGCAGGTAGGATTCAGCCTGATAATAACATGACCACTGCTGATTTGAATGTTCTTTCATCTTTGATTGATCAGAACCTGAAGGACATTAGTAAAAGGTTGGAAACGCTGAGTGTTAACGAGATGACACCAAACCAACCCTTGATGCAAACACCAGCATACCAACCCTTGGTGGAAGCACCATCATACAACCAATCCCATTTGCAAACACCAGCGTACCAACCCCAGACGCAAACTCCAGCATTGGCAGTACCCAAGAATGAAGAAATGGCACTGCTGAATTATGGCCATGGGTTGGATATGAGTGATAACTCCATGCAAAGGCTGTTGTTTATGGACTTGCTTAATAGTAATGGGGATGAGACGATAATGCCTCCATTTGGTGATGCCAATCTCCAACTCCAAAATGACTTTTGGCCTGACCTAGGCCTATTACCTTGA 804 0.4465 MTRKKVKLAFIGNDAARRATYKKRKKGMLKKVEELSTLCGIEACAIVYGHNDPEPEVWPSHWGVQRVVEKLRTMPELEQRKKMVNQEGFIGQKILKGNEKVMKLMKDNREKEITMFLFQCLNAGRIQPDNNMTTADLNVLSSLIDQNLKDISKRLETLSVNEMTPNQPLMQTPAYQPLVEAPSYNQSHLQTPAYQPQTQTPALAVPKNEEMALLNYGHGLDMSDNSMQRLLFMDLLNSNGDETIMPPFGDANLQLQNDFWPDLGLLP* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0468 267 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Gso18g0468 267 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Gso18g0468 267 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g0468 267 PANTHER MADS BOX PROTEIN 2 169 - -
Gso18g0468 267 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0468 267 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0468 267 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso18g0468 267 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Gso18g0468 267 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso18g0468 267 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 169 - -
Gso18g0468 267 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0468 Gso-Chr18 4637034 4638175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0468 1 158 Type I MADS-box Gene Family AT5G48670 56.962 8.07e-51 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g0468 SRF-TF 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0468 - - gmx:106797065 525.783