Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0467 ATGAACAGCGACATTTCCCGGTGGGTCATGGAGTTCCTCCTCCGCAGTTCCGTCCCCGATTCCCTCATCCAGAAAACCCTAACCGCCCTCCCTCTATCCCCCGCCGAACCCCGCCTCAAGAAAAACCTCCTCCTCCGCACCCTCCAAACCCTCCTCCGTAGAGCCACACTATCGGAAACCGCGCTCGACATCCTCGAAGACCTCGCCCCTGTCTCTGACGCGCAACGCCGCGCGTACTGCGCAGTCGCCGTGGAGTGCACCGTCAAGTACCTCGCTGCGTGCCCCGACGTTATCGATGGTGAGTACGCCGGCGCTGTACGGCGGATCTGGCGCGGACGCGTGGCGGCGCTGCAGGCGCGCCGGAGCGGGCTGGTCTCTGGGGAGTTGGTGCGGTGGCGCGATGAGATAGAGAACGCGCTTGGGGAGGATTCCAGGGCGGCTCGCGAGAGGCTGGCGGGGTTGAATAGTCGGAGGGACGCGATGAATGAGGTGAGGGTGTATTTGAAGGAAGCGTGGGAAATGATGGGGCCTTCGTTTTTGGAAACGGTTGCGGCAACGGAGAAGAAGAACGATGAAGGTGCCTGTGATAATGGTAGTGGTAATGGTAATGATGATGATCATGATGATGGTGCATGCATGGAGGATGTGGCAATGCATTATGAGAATCAGGAACCATTGGAAGAGAGTGTTGATGCGAATCAGGAAGTGGGTGGGTCTGACTTAACTCCTCAGAGGGATAAAGCAATTCTGAAGCGGAATCCTCAGCTTAAACACAAACACTCTGCATTTCGTGCATCTCATAAGGGAAGGGGAATTAAAATATCTAGTCCGGAGGAAGTGGAGTCAACCAAACCATGGAGAAAACATGATCCTGTGCCTAGTGCTGAAGTTAAAAAAATTCGGGAATCCCTAAAATCAAGTTCTTCGGAGTTACAGGCATTGGTTAATGATCCTCTTCCCGATGCATTGCATATATCTGATGTTGTAAGATCCAAATTGGCAACTAGTGATACAAAAATTGAGCCACCGATTGAAAACCAGCATGAAGATGTAGAAGTACAGGATCCAGATGTTTGCCTGAGTATTGTACCTTTTCAGCCCAATGATGTCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTAACATTCACCAGCCCAGCTTGATGGAACGGAACAGAAGTGCTCGTACCTTTGAGTGGGAGGATTCAATAGACAACTCACAACAAGCAAGACAGCCAAGGAGGAGGAAAAGGAAATGGAGTTCGTTGGAAGAAGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACAATCCGAAGTTTTTACAGTAACATATTTGAAAATAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGGTGA 1407 0.506 MNSDISRWVMEFLLRSSVPDSLIQKTLTALPLSPAEPRLKKNLLLRTLQTLLRRATLSETALDILEDLAPVSDAQRRAYCAVAVECTVKYLAACPDVIDGEYAGAVRRIWRGRVAALQARRSGLVSGELVRWRDEIENALGEDSRAARERLAGLNSRRDAMNEVRVYLKEAWEMMGPSFLETVAATEKKNDEGACDNGSGNGNDDDHDDGACMEDVAMHYENQEPLEESVDANQEVGGSDLTPQRDKAILKRNPQLKHKHSAFRASHKGRGIKISSPEEVESTKPWRKHDPVPSAEVKKIRESLKSSSSELQALVNDPLPDALHISDVVRSKLATSDTKIEPPIENQHEDVEVQDPDVCLSIVPFQPNDVNLGKKSSVHCSNIHQPSLMERNRSARTFEWEDSIDNSQQARQPRRRKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFENRSGVDLKDKWRNMIR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0467 468 MobiDBLite consensus disorder prediction 399 419 - -
Gso18g0467 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 412 468 IPR017930 -
Gso18g0467 468 SMART sant 416 468 IPR001005 -
Gso18g0467 468 ProSiteProfiles Myb-like domain profile. 412 467 IPR001005 -
Gso18g0467 468 PANTHER MYB TRANSCRIPTION FACTOR 1 468 - -
Gso18g0467 468 MobiDBLite consensus disorder prediction 190 211 - -
Gso18g0467 468 Pfam Myb-like DNA-binding domain 417 466 IPR001005 -
Gso18g0467 468 CDD SANT_TRF 418 468 - -
Gso18g0467 468 Gene3D - 407 468 - -
Gso18g0467 468 PANTHER MYB TRANSCRIPTION FACTOR 1 468 - -
Gso18g0467 468 SUPERFAMILY Homeodomain-like 413 467 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0467 Gso-Chr18 4625941 4631603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0467 420 467 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.75e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso18g0467 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0467 - K11111 gmx:100791258 898.656