Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0462 ATGGGTTCCGACATTTGCGTTGTGAATGGTTCGTGCACTCACGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTATGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCTTGACCCGTTTTCTACTATTCCGGACAAGGTTTTAAATTGCGGTTGTGGTTGCGGTTTCGTCGCAATCATTGACATTGCGGGAAAATGCAGATCTGCTTACGAGAATTCAGTTTTCTGCAATAAATTCCACTGCCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGCGGATGCATAGTATCTAGATCTTTGTTCGAGTATCTTGACTTTGGTGGCATAGGTTGTGTGAGCTGTGTAAATACTACCCAACTTAGTATGATGAGGAATATGGAAAATCCAAATGTGACTGTTTTGTCGATAAAAAATAATGCGGGTGATCGGCATTCTGCTCATTTTGATGGCAGACTGCTTGTGGGTGGTGTTGATGAAGGAAAACTTATGCAATTCTGCAAAATTATCGAAGCTAGTGAATCCAGCCGTTGGAATCATGCTCAAAGAGATGGCATAATTGCACATCGTGGGCAAAAAAACCAAGAAGCCAAGAGTTCATTCAGGGAAGTGGAAATTGGATTTTCAAATGTGATGAATCCATCTGTTCAATCATTGACATTTGCTACATTAGAAAATAATAGGTCAACATGGGAGATTAAAAACATGCATGAATCAAATACAAAGCCATCTTTGAGTATGTATCTGGGAAATGCATCAGGGAACAACTCTGTCCCACCTTCTGCTGGAGAGGCTGTAGAAGGAAGACTTGATGGAAAAACATCTCCTCCCTTTCAAGGATCACGCTCTATATTTCCTAAACCATTGAAGAATGGGCTTACCATGAATATGGAAACAAATAAAGGTACAATGTCTCAATCACGTGTTGCTCGGCCACCTGCAGATGGCAGGGGCAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACTGATGAAGAGCTAGAGCGATTGGCTGGAGATTTGAAATCCACTGTAGTGCCATTATTTGAGAAGGTGTTGAGTGCCAGTGATGCAGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGTGCTGAGGCATATTTTCCTCCTATTTCACAATCTGAAGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAATAACAACAGCAGGATGTATGTATTGGAGGGTGTGACTCCTTGCATACAGGCCATGCAATTATGTGCTGGTGATACTGTAACATTTAGTCGGATAGATCCCGGAGGCAAACTTGTTATGGGTTTCAGAAAGGCATCTAATTCTACAGATACACAGGATGCTTCCACATCTGCACAATCTAATTTAGCAAAGGGAACCGTCTCTTCTGGTACCGAGAATCTGCCATCAGGAAGTAATAATGCCGATCTTCTCCATTCATTGACAGGGAATGTTGAATGTCACTTAAATGGACATACAGAGCATCTGCATTTGGGTACTGGAACTGCTGGATTGCTTAAAACTGAAAATAATGAGATGACAAACAGTAGTTCACCACAACAACAAATTTCCGTTTTAGAGAAGAAGAGGACTCGCAATATTGGGCCTAAAAGTAAGAGGTTGCTAATTGATAATGAAGATGCCATGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTGCTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTAATCGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACCATATTCAGTGCCTGTTCATCTGGGGGGAAGGAACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTGCCTGTTGATGCTCTTCTTCCTCCCAAGTGGACATGTTGTGAAAATGTTTGGGATTCAAGCAGGTGTTCATGCTCTGCGCCAGAGGAGTTAAGTTCAAGGGAAATAGAAAATCTTCTGAAAAACAACAAAGATTTTAAGAAGCGGCGAATCGTAGAAAGCAGCAAGTCAATCCAAGAACATGAGCCTTCTGGTCTTGATGCTCTTGCCAGTGCAGCAGTTCTTGGAGAAAATCTCATTGACACTGCCGAGTCATCAGCTGGAGTCACCACCAAACATCCTAGACACCGTCCTGGCTGCTCTTGCATCGTGTGCATTCAGCCACCAAGTGGAAAGGGGAGACATAAGCCGACATGTACATGCAACGTGTGCATGACCGTGAAGCGCCGGTTCAAAACTCTCATGCTAAGGAAGAAGAAACGGCAATCCGAACGTGAAGCAGATGCTGCCCAAAAAGATCAAACTCTTCCAAAAGACGAGCTGGATACCAATGGAGCATCGAGAGACGATACAAGTCAGTTGGAGAAAGAGGCTGGACTAAAAAGTCAACATGAGGTGGGTGGGTCCAGTGCTGGACAGATAGATCTGAATTCTCATCCCAACCGCGAAGACATGCAAGTGGAAACCACTGGACTTAACATGTCTAGTCATCTTGAACCTGCAACAAACCATACAGTAGGGGAATTTATGAACCAAAATGGCCTAAGAAACTTTAATAATGAAGTGCAAACTGGTCAGAATTCTTCTTTGCACACTCCTAAATCTAATGGAGAAGGTCAGAGATACTTCTCTGATGGAAGATGCTTTGCATCCATTATGTGGAACCAGGAAAGAAAAGATGAGTGGAGGACGCTGGCGCGATCAAGAAGAAGGGGAAGGGGAACGGGAAGAAAGAGAAGAGAATTTTTTTAA 2835 0.437 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDILDPFSTIPDKVLNCGCGCGFVAIIDIAGKCRSAYENSVFCNKFHCQQTGWRECNFCNKPIHCGCIVSRSLFEYLDFGGIGCVSCVNTTQLSMMRNMENPNVTVLSIKNNAGDRHSAHFDGRLLVGGVDEGKLMQFCKIIEASESSRWNHAQRDGIIAHRGQKNQEAKSSFREVEIGFSNVMNPSVQSLTFATLENNRSTWEIKNMHESNTKPSLSMYLGNASGNNSVPPSAGEAVEGRLDGKTSPPFQGSRSIFPKPLKNGLTMNMETNKGTMSQSRVARPPADGRGKNQLLPRYWPRITDEELERLAGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLCAGDTVTFSRIDPGGKLVMGFRKASNSTDTQDASTSAQSNLAKGTVSSGTENLPSGSNNADLLHSLTGNVECHLNGHTEHLHLGTGTAGLLKTENNEMTNSSSPQQQISVLEKKRTRNIGPKSKRLLIDNEDAMELKLTWEEAQDLLRPPPSVKPSIVTIEDQVIEEYDEPPVFGKRTIFSACSSGGKEQWAQCDDCSKWRKLPVDALLPPKWTCCENVWDSSRCSCSAPEELSSREIENLLKNNKDFKKRRIVESSKSIQEHEPSGLDALASAAVLGENLIDTAESSAGVTTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCMTVKRRFKTLMLRKKKRQSEREADAAQKDQTLPKDELDTNGASRDDTSQLEKEAGLKSQHEVGGSSAGQIDLNSHPNREDMQVETTGLNMSSHLEPATNHTVGEFMNQNGLRNFNNEVQTGQNSSLHTPKSNGEGQRYFSDGRCFASIMWNQERKDEWRTLARSRRRGRGTGRKRREFF* 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0462 944 MobiDBLite consensus disorder prediction 306 320 - -
Gso18g0462 944 SMART B3_2 363 464 IPR003340 GO:0003677
Gso18g0462 944 Pfam CW-type Zinc Finger 629 671 IPR011124 GO:0008270
Gso18g0462 944 Gene3D - 627 682 - -
Gso18g0462 944 MobiDBLite consensus disorder prediction 780 823 - -
Gso18g0462 944 MobiDBLite consensus disorder prediction 268 335 - -
Gso18g0462 944 Pfam B3 DNA binding domain 363 462 IPR003340 GO:0003677
Gso18g0462 944 ProSiteProfiles Zinc finger CW-type profile. 624 674 IPR011124 GO:0008270
Gso18g0462 944 MobiDBLite consensus disorder prediction 777 841 - -
Gso18g0462 944 MobiDBLite consensus disorder prediction 465 498 - -
Gso18g0462 944 ProSiteProfiles B3 DNA-binding domain profile. 363 464 IPR003340 GO:0003677
Gso18g0462 944 Gene3D - 341 468 IPR015300 -
Gso18g0462 944 SUPERFAMILY DNA-binding pseudobarrel domain 361 463 IPR015300 -
Gso18g0462 944 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 886 - -
Gso18g0462 944 MobiDBLite consensus disorder prediction 827 841 - -
Gso18g0462 944 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 886 - -
Gso18g0462 944 CDD B3_DNA 361 462 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0462 Gso-Chr18 4566897 4576245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0462 1 848 B3 DNA Binding Superfamily AT2G30470 48.376 0.0 700
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Gso18g0462 B3 1.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0462 - - gmx:100789147 1871.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0462 18 4566897 4576245 Gso14g1724 14 49426646 49434468 PCT
Gso18g0462 18 4566897 4576245 Gso2g2009 2 44553219 44561293 PCT
Gso14g1724 14 49426646 49434468 Gso18g0462 18 4566897 4576245 PCT
Gso2g2009 2 44553219 44561293 Gso18g0462 18 4566897 4576245 PCT