Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0459 ATGTCGTATGTGCCTCCGCACCTCAGAAACGCCACCTCCACCTCCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTTGACAACAACAACAACAACCACCACCACCACCACAAGCTCGCATTCCCCTCCAACACCACCACCACCAATTGCTCTCCCTCTCTCTCCTTCCACAACAATGCCTCTCGCCGGAGCTCCGCCGCGCCTCCCTCGCCGCGGATTCTTGCCACCCCCGACGCCGTCTTCCCCCAATGGCAACCCTCCGAACGCGTTTCTCGCATGACTCCCGAGCAGATTGAAGAAATCCGATCCAGGCTTAATCTTGATGTTGCTGTCGCATCTGACTCTCCTCCTGCACCTGCGCCTGCTCCAATAGAATCGTTTACTGATATGTGTTTGCATCCGAGTATCATGAAGGACATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAGGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGTAGCGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCCTGGCCCAACCTCCAATTCGGCGCAATGATGGTCCCCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCTCTCGAGTCATTAAAAACTGCCATAGTTGTGGGCGGAACTAACATTGAAAAGCAGAGGTTTGAACTAAGAGCCGGAGTTGAAATAGCTGTGGCCACCCCTGGAAGATTCATTGATCACTTACAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTGGACGAGGCAGATAGAATGCTTGATATGGGTTTTGAACCACAGATAAGGGAGGTAATGAGAAATCTTCCAGAGAAGCATCAAACACTGCTGTTTAGTGCGACTATGCCTGTGGAGATTGAAGAATTATCAAAGGAGTACTTGGCTAACCCTGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACTCTTGTGAAAATTTCTGAAAATGAGAAGATTGATCGGCTTCTAGATTTGCTTGTAGAGGAGGCATCACAGGCTGAAAAATGTGGCCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGTGATGAAGTTGCTGAAGCGTTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAAGCTGCCTTGCATGATTTTCGGAGTGGCACCACCAACATTTTGGTTGCCACTGATGTCGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATCTAGATCTTCCAAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACAGGGCGTGCGGGATCAACTGGCTTAGCTACTTCATTTTACACCGATCGTGACATGTTCCTCATGGCAAATATAAGGAAAGCAATAGCTGATGCTGAATCTGGGAACACACTGACATTTGCAACTGGAAAGGTTGCTAGAAGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAACATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATGAACATTGAAGATAAATATAAATTCATGATTACTGCCACAAACACTAAAAGAGAGGGAGCAGCAGATAGTGCCTGGGATGATTAA 1713 0.4729 MSYVPPHLRNATSTSVATARTPSVTLDNNNNNHHHHHKLAFPSNTTTTNCSPSLSFHNNASRRSSAAPPSPRILATPDAVFPQWQPSERVSRMTPEQIEEIRSRLNLDVAVASDSPPAPAPAPIESFTDMCLHPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPPIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRFELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEELSKEYLANPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEEASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGTTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLMANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASMNIEDKYKFMITATNTKREGAADSAWDD* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0459 570 Pfam DEAD/DEAH box helicase 149 320 IPR011545 GO:0003676|GO:0005524
Gso18g0459 570 SMART ultradead3 144 347 IPR014001 -
Gso18g0459 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 493 IPR027417 -
Gso18g0459 570 CDD SF2_C_DEAD 344 482 - -
Gso18g0459 570 Gene3D - 338 532 IPR027417 -
Gso18g0459 570 Coils Coil 211 231 - -
Gso18g0459 570 SMART helicmild6 392 473 IPR001650 -
Gso18g0459 570 Gene3D - 83 336 IPR027417 -
Gso18g0459 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 535 - -
Gso18g0459 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Gso18g0459 570 CDD DEADc 136 333 - -
Gso18g0459 570 Coils Coil 514 534 - -
Gso18g0459 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 514 IPR001650 -
Gso18g0459 570 MobiDBLite consensus disorder prediction 41 66 - -
Gso18g0459 570 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Gso18g0459 570 MobiDBLite consensus disorder prediction 1 76 - -
Gso18g0459 570 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Gso18g0459 570 Pfam Helicase conserved C-terminal domain 356 473 IPR001650 -
Gso18g0459 570 MobiDBLite consensus disorder prediction 1 29 - -
Gso18g0459 570 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 22 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0459 Gso-Chr18 4523261 4532881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0459 125 495 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 5.06e-71 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0459 K12823 - gmx:100787545 1053.51