Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0457 ATGAGTGACACACACCAAACTTTCATGTCCGTACAACCACCGCTGAATCTCCACCACCCCTTTAACCCACAAGCCTCAAGCTCAAATTTTGACGGCGACCCACCATGCAAAACCGCCGCAAAAACCAAACCTCCGCGCAAGAAGCTACTCCGGGTAATTCTCACCGACCATGACGCCACCGATTCTGACTCCTCCGGTGACGACGACGACCCAAAAAACCCACCGAAACACAAAAAGGTGAAAAGACAAATCACCCACATCACCATAAACCTTCCCTCTTTCTCAGAAGCCCCAACTCCAGCACCAATACCAACACCTTCTTCGTCTTCTTCTATTGATCCGACCCGTTTAACCCTACCCAAGAAACGACCCGCCGTGCCTCGTCGCCGTAGCAAGTTCCGCGGGGTCCGGCAGCGGCCATGGGGACGGTGGACCGCAGAAATCCGTGACCCGAATCAGAGAAAACGGGTCTGGCTCGGAACGTTCGACACGGCGGAGGAAGCCGCCGCCGTGTACGACGACGCCGCCTTGAAGCTCAAGGGCCCCAACGCCGTCACTAACTTCCCCCTCTCCGCCGCCGGAAAAACGGAACATGATACCGCGCCGCCGGAGGCGGCTTTCTCCGGCGAAGGTTTTTCATCTCCCACTTCGGTTCTCACTTACTTTGACGGAGACTCGACGCCACTTTACGGTTTCCGTTACGGCGAGGTCGACGCGTTCGGGTTTGACATCGATGCGCCGTTTAGTTTGACAGACGTTAACTTAGGGGTGCTGAGTCAGCGGTTCGGGAAGGAAGATTTCGGCGAGTTTGACCCGGACGAGTTCTTGACGTGGCCGAGTTAA 843 0.5611 MSDTHQTFMSVQPPLNLHHPFNPQASSSNFDGDPPCKTAAKTKPPRKKLLRVILTDHDATDSDSSGDDDDPKNPPKHKKVKRQITHITINLPSFSEAPTPAPIPTPSSSSSIDPTRLTLPKKRPAVPRRRSKFRGVRQRPWGRWTAEIRDPNQRKRVWLGTFDTAEEAAAVYDDAALKLKGPNAVTNFPLSAAGKTEHDTAPPEAAFSGEGFSSPTSVLTYFDGDSTPLYGFRYGEVDAFGFDIDAPFSLTDVNLGVLSQRFGKEDFGEFDPDEFLTWPS* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0457 280 SMART rav1_2 132 195 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 44 222 - -
Gso18g0457 280 MobiDBLite consensus disorder prediction 122 137 - -
Gso18g0457 280 MobiDBLite consensus disorder prediction 1 138 - -
Gso18g0457 280 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 MobiDBLite consensus disorder prediction 1 33 - -
Gso18g0457 280 MobiDBLite consensus disorder prediction 49 76 - -
Gso18g0457 280 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 44 222 - -
Gso18g0457 280 Gene3D AP2/ERF domain 131 191 IPR036955 GO:0003700|GO:0006355
Gso18g0457 280 ProSiteProfiles AP2/ERF domain profile. 132 189 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 CDD AP2 131 191 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 PIRSF PTI6 23 280 IPR017392 GO:0003700
Gso18g0457 280 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Gso18g0457 280 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0457 Gso-Chr18 4502259 4503791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0457 48 221 AP2-EREBP Transcription Factor Family AT4G27950 42.781 1.53e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso18g0457 AP2 6.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0457 K13434 - gmx:102660028 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0457 18 4502259 4503791 Gso14g1735 14 49586738 49588711 PCT
Gso18g0457 18 4502259 4503791 Gso2g2014 2 44643117 44645078 PCT
Gso14g1735 14 49586738 49588711 Gso18g0457 18 4502259 4503791 PCT
Gso2g2014 2 44643117 44645078 Gso18g0457 18 4502259 4503791 PCT