Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0450 ATGTATCTTTCAAAGTGTTTCAAGCATGAAGTTGTTTTCATCTTGTGGTTCTGCTGCTATTTGCTACATGCTGCTGGGCAGAATAACATCACTGATCCCGTTGAAGTTGATGCATTGAGAGCCATTAAGAGTCGTTTGATTGATCCTAATGGAAATTTGAGCAATTGGAATGATGGAGACCCATGTACGTCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACAAAAGAGGATGGCCATCTGCATGTTGAAGAATTGCAATTACTGAGATTGAACTTGTTGGGAACTTTGGCACCAGATCTTGGCAAATTAACTTATATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGGAGTATTCCAAATGAAGTTGGCAATATCACATCTTTGGAACTCTTGCTTCTGAATGGAAATAAATTAACAGGTTCACTACCAGAGGAGATTGGCTATCTTCCAAACTTGGACAGAATACAAATTGATCAGAACCAAATATCAGGACCTATACCTACGTCATTTGCAAACCTGAACAAAACAAAGCACTTTCACATGAACAATAATTCACTTAGTGGACAAATCCCACCAGAGCTTTCCCGATTATCAAATCTTGTTCACCTTCTTCTCGACAACAACAACTTATCAGGATATCTTCCCCGTGAGCTGGCTGATATGCCAAGCTTACTTATCATTCAACTTGATAACAACAACTTTGAGGGAAATAGCATTCCTGATACATATGCCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGCTTGCAAGGACCAATTCCTGATTTAAGCAGGATACCTCACCTTCTTTACCTTGACCTCAGTTTCAACCAGTTGAATGAATCAATTCCTCCCAATAAGCTTTCTGAACATATCACAACCATTGATTTATCAAGCAACCGCCTTACTGGAAATATTCCATCCTACTTTGCTGATCTTCCACGTCTTCAGAAACTGTCACTTGCAAACAATTCATTGGATGGCACTGTTTCTTCCTCCATTTGGCAGAATAAGACTTCAAATGGAACAAAAACATTTCTCTTGGAGTTGGAAAATAATAATCTTACAACCATATCAGGCAGTATTGATCTTCCTCCAAATGTCACAGTTGGGCTTAATGGAAATCCCCTTTGCTCAAATGTAACCCTGACTCAGTTCTGTGGATCTGAAGGGGCTAATGTAACAGATGGTTCATTTACAACAAATTCCAGTTCCTGTCCCCCTCAAGCATGCCCTCCTCCTTATGAATACTCTGTGAATTGTTTCTGTGGGCTTCCATTGATTGTTGACTATCGGCTGAAAAGTCCTGGATTTTCAAACTTTCTTCCATATTTGAATGATTTTGAGGTCTACATGGCTTCTGGTGTTAAAATATCTACCAATCAGCTACAATATGATTTTTATTGGCAAGTAGGACCTCGGCTGAGAATGAACTTGAAGTTTTTTCCTGCATATGTTGATAACAGTAGTAGTCATACTTTCAATAGAAGTGAGCTCCTACGGCTCACAAGCATGTTCACAGGATGGCTAATTCCAGACAGTGATTTGTTTGGGCCTTATGAACTGATGGGTTTTAATCTTTTGGGTCCTTACCAGGATGAGATTGGCAGGAGTTCAAAATCAGGGATAAGTACGGGTGCGCTGGTTGGCATAGTCATAGGGGCAATTGCCTTTGCAGTGACGTTATCTGCAATTGTTACCATTCTTATATTGAGAATAAGATTGAGAGATTATCATGCCGTTTCCAGGCGACGTCATGCATCCAAGATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCTGCCACAAACAATTTCAGCACCTCTGCTCAAGTTGGACAAGGGGGCTATGGGAAGGTTTATAAAGGGGTTCTTTCTGATGGCACAATTGTTGCCATAAAACGTGCACAAGAGGGATCCCTGCAAGGTGAGAAGGAGTTCCTTACAGAAATATCATTACTATCAAGGTTACATCATCGCAATCTTGTGTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCTAAAGATCCTCTGACTTTTGCCATGAGATTGAAGATGGCATTAGGGGCAGCTAAAGGTCTTTTGTATCTACACTCGGAAGCTGATCCTCCAATATTTCACCGAGATGTAAAGGCCAGCAACATATTATTGGACTCTAAGTTTTCTGCAAAAGTGGCTGATTTTGGACTTTCACGGCTTGCTCCAGTTCCAGATATGGAAGGAGTTGTGCCTGGTCATGTATCTACAGTGGTAAAGGGGACCCCGGGTTACCTTGATCCAGAGTACTTCCTAACTCGCAAATTGACTGACAAGAGTGATGTTTATAGTCTTGGTGTCGTATTTCTGGAACTTTTGACAGGGATGCATCCTATCTCACACGGCAAAAATATTGTTAGAGAGGTTAACGTTGCGTACCAATCTGGCGTGATATTTTCAATTATCGATGGACGAATGGGCTCTTATCCATCTGAGCATGTGGAGAAATTTTTGACTTTGGCCATGAAGTGTTGCGAAGATGAGCCAGAGGCTCGGCCTAGAATGGCAGAAGTGGTCAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAGAGAGCTGAATTTATGTCCAGTGATTCTGGCAAAGCAGACAGTCACAGTACACCATCTTCATCTTCTGCCTCTGCTTCTATTATGAAGACACCTTTTGTATCAGGAGATGTGTCAGGTAGTGACCTTGTTAGTGGAGTGATACCAAGCATCAAGCCAAGATAG 2862 0.4095 MYLSKCFKHEVVFILWFCCYLLHAAGQNNITDPVEVDALRAIKSRLIDPNGNLSNWNDGDPCTSRWKGVLCFNETKEDGHLHVEELQLLRLNLLGTLAPDLGKLTYMKRLNFMWNNISGSIPNEVGNITSLELLLLNGNKLTGSLPEEIGYLPNLDRIQIDQNQISGPIPTSFANLNKTKHFHMNNNSLSGQIPPELSRLSNLVHLLLDNNNLSGYLPRELADMPSLLIIQLDNNNFEGNSIPDTYANMSKLLKMSLRNCSLQGPIPDLSRIPHLLYLDLSFNQLNESIPPNKLSEHITTIDLSSNRLTGNIPSYFADLPRLQKLSLANNSLDGTVSSSIWQNKTSNGTKTFLLELENNNLTTISGSIDLPPNVTVGLNGNPLCSNVTLTQFCGSEGANVTDGSFTTNSSSCPPQACPPPYEYSVNCFCGLPLIVDYRLKSPGFSNFLPYLNDFEVYMASGVKISTNQLQYDFYWQVGPRLRMNLKFFPAYVDNSSSHTFNRSELLRLTSMFTGWLIPDSDLFGPYELMGFNLLGPYQDEIGRSSKSGISTGALVGIVIGAIAFAVTLSAIVTILILRIRLRDYHAVSRRRHASKISIKIDGVRAFTYGELSSATNNFSTSAQVGQGGYGKVYKGVLSDGTIVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKDPLTFAMRLKMALGAAKGLLYLHSEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTRKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNVAYQSGVIFSIIDGRMGSYPSEHVEKFLTLAMKCCEDEPEARPRMAEVVRELENIWSTMPESDTKRAEFMSSDSGKADSHSTPSSSSASASIMKTPFVSGDVSGSDLVSGVIPSIKPR* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0450 953 SUPERFAMILY L domain-like 44 393 - -
Gso18g0450 953 Pfam Protein kinase domain 619 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0450 953 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 10 923 - -
Gso18g0450 953 Gene3D Ribonuclease Inhibitor 34 186 IPR032675 -
Gso18g0450 953 MobiDBLite consensus disorder prediction 909 933 - -
Gso18g0450 953 MobiDBLite consensus disorder prediction 898 953 - -
Gso18g0450 953 SUPERFAMILY Protein kinase-like (PK-like) 603 911 IPR011009 -
Gso18g0450 953 CDD STKc_IRAK 624 890 - -
Gso18g0450 953 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0450 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Gso18g0450 953 Gene3D Ribonuclease Inhibitor 292 416 IPR032675 -
Gso18g0450 953 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0450 953 Gene3D Ribonuclease Inhibitor 187 291 IPR032675 -
Gso18g0450 953 Gene3D Transferase(Phosphotransferase) domain 1 694 912 - -
Gso18g0450 953 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Gso18g0450 953 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Gso18g0450 953 SMART LRR_typ_2 272 297 IPR003591 -
Gso18g0450 953 SMART LRR_typ_2 224 248 IPR003591 -
Gso18g0450 953 SMART LRR_typ_2 200 223 IPR003591 -
Gso18g0450 953 SMART LRR_typ_2 319 343 IPR003591 -
Gso18g0450 953 SMART LRR_typ_2 128 152 IPR003591 -
Gso18g0450 953 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Gso18g0450 953 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0450 Gso-Chr18 4426649 4438174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0450 18 900 Receptor kinase-like Gene Family AT5G01950 58.547 0.0 998
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Gso18g0450 Pkinase 7.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0450 - - gmx:100786467 1803.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0450 18 4426649 4438174 Gso14g1739 14 49644102 49655883 PCT
Gso14g1740 14 49659510 49674662 Gso18g0450 18 4426649 4438174 PCT
Gso2g2018 2 44705197 44730606 Gso18g0450 18 4426649 4438174 PCT