Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0449 ATGACGCATGCTCATACGCACACAATCAAACACAAAGCGTGTGCCTCCAAAGGGTATAAAAGCACCACCACCTTCTCCCTTCTCCATCTTCAAGCGTTCTACTATTTCGTCAATTCCAACAACACCACAATGGGAAGAAGACCGGCGAGGTGTTACCGGCAGATAAAGAACAAACCGTACCCGAAATCCCGTTTCTGCCGCGGCGTGCCGGAGCCGAAGATCCGAATCTACGACGTGGGAATGAAGAAGAAAGGCGTGGACGAGTTCCCGTTCTGCGTGCACCTGGTCTCGTGGGAGAAGGAGAACGTCTCCAGCGAGGCTTTGGAGGCGGCGCGCATCGCATGCAACAAGTACATGGCCAAGTTCGCCGGAAAAGATGCCTTCCACCTGCGCGTGAGGGTGCATCCCTTCCACGTGCTCCGCATCAACAAGATGCTATCGTGCGCCGGGGCCGACAGGCTCCAGACCGGCATGAGGGGCGCCTTTGGGAAGCCGCAGGGGACGTGCGCTAGGGTTAACATTGGTCAGGTGCTGCTCTCGGTGAGGTGTAAGGATGCTAACAGTCACCATGCTCAGGAGGCTCTTCGTAGGGCCAAGTTCAAGTTCCCCGGCCGCCAGAAGATCATTCTTAGCAGAAAATGGGGATTTACAAAGTTCAGTCGAAGTGAGTATTTGAAGTTGAAGTCTGAGAACAGAATTGTGCCGGATGGGGTCAATGCCAAGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGAGCCTGGAAGAGCTTTCTTACCAGCTACTGCTTAG 792 0.5429 MTHAHTHTIKHKACASKGYKSTTTFSLLHLQAFYYFVNSNNTTMGRRPARCYRQIKNKPYPKSRFCRGVPEPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVNIGQVLLSVRCKDANSHHAQEALRRAKFKFPGRQKIILSRKWGFTKFSRSEYLKLKSENRIVPDGVNAKVLGCHGPLANREPGRAFLPATA* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0449 263 ProSitePatterns Ribosomal protein L10e signature. 151 172 IPR018255 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 44 262 - -
Gso18g0449 263 Pfam Ribosomal protein L16p/L10e 55 209 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 TIGRFAM uL16_euk_arch: ribosomal protein uL16 44 217 IPR001197 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 Gene3D Ribosomal protein L10e/L16 44 258 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 SUPERFAMILY Ribosomal protein L16p/L10e 47 216 IPR036920 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 CDD Ribosomal_L16_L10e 84 209 IPR016180 GO:0003735|GO:0005840|GO:0006412
Gso18g0449 263 PANTHER 60S RIBOSOMAL PROTEIN L10 44 262 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0449 Gso-Chr18 4423291 4425243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0449 44 263 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.364 1.34e-143 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0449 K02866 - gmx:100779884 456.832