Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0435 ATGTCCGTGGAGACCATGTGCTCCGTTCTCAAGAAATACTTTGGGTTTTCGGATTTTCGGCCTTATCAGAGAGAAGTTATTGAGAAAATTATTGAGAAAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGCAAGTCCTTGTGTTATCAGGTACCTCCTTTGGTTGCTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCTTTGATGCAAGACCAGGTGATGGCTTTGAAACAACGGGGCATCAAAGCTGAATATCTTGGAAGTACTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAGCACGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTAGCAGTTTCTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGATTTTAGGGTTGAATACAAGCATTTAGACAAGCTACGTGAGGTTTTGCTAGATGTTCCTTTTGTTGGTCTAACTGCAACTGCTACTGAAAAGGTTCGATATGACATCATCAGTTCCCTGAAGCTGAATAATCCTTATGTTACAATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACTATTGAACCGAGGACAATCTTTCATTGATGAGCTTGTGCGAGAAATTTCAAAAGAAGTCACTAATGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGATATTCAAGTCATTTGCAGAAGCGGGCATTGAGGCAGGGATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATCGCCTTTGGCATGGGCATAGATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAGAGTCTAGAGTCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTATACTACACAAGAAGTGACTTTGCCAAGGGTGACTTTTATTGTGGAGATGTGAAATCAGAAAAACAAAGAAAAGCTATTATGGAGTCATTGCTTGCTGCTGAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTCCCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAATCTCAAGGAAGGAGCGTGACATGTCAAGGGAAGCATTCCTTCTAATGGCTTGCATTCATTCATGCAGGGGCATATGGGGCCTTAATATGCCCATTGATGTCCTGCGCGGGTCTCGAGCCAAGAAAATTCTTGATGTTCAGTTTGACAAGCTTCCACTTCATGGACTGGGGAAAAATTATCCAGCAAATTGGTGGAAAGCACTTGGACATCAATTGATTTCTCAAGGTTATTTGAAGGAGATTGTTAGTGACAGATACAGAACTATTAGTGTCAGTTCAAAAGGAGAGCAATTTTTGGCGTCTTCTAGACCAGATTATCAACCTCCCTTGGTTTTGACATTGACTGCTGAAATGCTTGGAGAAGAAGATAATGGAAACACACAAGAAGCATTCAAAACTTTATCCACTTCAGAATCAGAAGGTTTTTCAGAGGCTGAGGGACAGCTCTACCAAATGCTTTTGGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACAGCTCCATATGCTATATGTGGTGATCAAACGATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGACTAGCAAATATTGATGGTGTGAATCAGCACCTAGTAACAGAATATGGAGATGATTTTCTTCAAGTTATTCAGAAACTGTCACAAGTATTAAACCTATCATTGGATGGGGAAGCAAGAGTCGCAACAGCAAGTTTGCAAACTAATGAAGTAAGGAAAGTATCTCTAGTAACCAACAAATCCAACAAGTTGACACCGGCAAAGTTTGAAGCTTGGAAAAAGTGGCATGAAGATGGTTGTTCTATTCATGAGATTGCTAACTTTCCAGGTAGATCGGCTCCTATAAAAGAACAAAGTGTTGCTGAATATCTGCTGGAAGCTGCTCAAGAAGGATTACCTTTTGATTGGGCTAGATTTAGCGAGATGATAGGACTGACACAAGGGATCATATCAGAAATTCAGGGTGCTATTTCAAAAGTTGGATCTACAGATAAGCTGAAACCTATAAAAAATGAATTGCCAGAAGAGATAAGTTATCAGCACATCAAGACTTATTTGACAATGCGAAACTGTGGAATATCCTTAGAAGCAATTCAATCTGGAAGTAACCAGACTGGGAAAGATGACGAACCTGCACACAATGCTTCAAATTTGTCAGATCCTACTTTAGAAACATGCCACGTGGAAAGATACTGTGAAGACGGCATCTCTGCCAAAAGTTCTCTGGAAAAATGGGACCTAGAAATTGATGAGGTGCCTATTCTACCTGTCAATGGTTCGGAGGTACAGAAGCTTCCATTAGTCTGTGAGGGGGAATTCACAAACAAACGACAAAAAGTCAGTGAAACAAAGGAAGTAAATTCAACTAAATTGAAGGCTACAGAGAGTTCTGTTGTAGAGTGGTTGAAGAACCTTGATGAAGGGGCTACATTGAGCGATGTTTTGGAACACTTCAATGGATCCAGTAAAGATTCCGTGGTTGAACTGCTAAATTGCCTTCAGTCTGACTTTTCAATATATAGTAAAGGTGGCACGTATAAGATTCTGTAA 2763 0.405 MSVETMCSVLKKYFGFSDFRPYQREVIEKIIEKRDCLVVMATGSGKSLCYQVPPLVAKKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSTQKDFTVHSKAEHGQFDILFMTPEKACTVPSSFWSNLLKAGISLFAVDEAHCISEWGHDFRVEYKHLDKLREVLLDVPFVGLTATATEKVRYDIISSLKLNNPYVTIGSFDRTNLFYGVKLLNRGQSFIDELVREISKEVTNGGSTIIYCTTIKDVEQIFKSFAEAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGIDKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDVKSEKQRKAIMESLLAAERYCVLTTCRRKFLLEYFGEKFPADRCGNCDNCKISRKERDMSREAFLLMACIHSCRGIWGLNMPIDVLRGSRAKKILDVQFDKLPLHGLGKNYPANWWKALGHQLISQGYLKEIVSDRYRTISVSSKGEQFLASSRPDYQPPLVLTLTAEMLGEEDNGNTQEAFKTLSTSESEGFSEAEGQLYQMLLEERLKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTEYGDDFLQVIQKLSQVLNLSLDGEARVATASLQTNEVRKVSLVTNKSNKLTPAKFEAWKKWHEDGCSIHEIANFPGRSAPIKEQSVAEYLLEAAQEGLPFDWARFSEMIGLTQGIISEIQGAISKVGSTDKLKPIKNELPEEISYQHIKTYLTMRNCGISLEAIQSGSNQTGKDDEPAHNASNLSDPTLETCHVERYCEDGISAKSSLEKWDLEIDEVPILPVNGSEVQKLPLVCEGEFTNKRQKVSETKEVNSTKLKATESSVVEWLKNLDEGATLSDVLEHFNGSSKDSVVELLNCLQSDFSIYSKGGTYKIL* 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0435 920 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 6 750 - -
Gso18g0435 920 SMART hrdc7 545 625 IPR002121 GO:0003676
Gso18g0435 920 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 218 372 IPR001650 -
Gso18g0435 920 Pfam Helix-turn-helix domain 661 757 IPR029491 -
Gso18g0435 920 SUPERFAMILY HRDC-like 544 623 IPR010997 GO:0000166|GO:0044237
Gso18g0435 920 ProSiteProfiles HRDC domain profile. 545 625 IPR002121 GO:0003676
Gso18g0435 920 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 342 IPR027417 -
Gso18g0435 920 Pfam RQC domain 405 503 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso18g0435 920 SUPERFAMILY "Winged helix" DNA-binding domain 400 506 IPR036390 -
Gso18g0435 920 MobiDBLite consensus disorder prediction 772 791 - -
Gso18g0435 920 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 27 194 IPR014001 -
Gso18g0435 920 Gene3D - 202 403 IPR027417 -
Gso18g0435 920 SMART RQC_2 409 513 IPR018982 GO:0006260|GO:0006281|GO:0043138
Gso18g0435 920 Pfam Helicase conserved C-terminal domain 221 327 IPR001650 -
Gso18g0435 920 Gene3D - 404 527 IPR036388 -
Gso18g0435 920 SMART helicmild6 247 328 IPR001650 -
Gso18g0435 920 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 750 - -
Gso18g0435 920 Gene3D HRDC domain 543 624 IPR044876 -
Gso18g0435 920 Gene3D - 2 200 IPR027417 -
Gso18g0435 920 Pfam HRDC domain 550 615 IPR002121 GO:0003676
Gso18g0435 920 CDD DEXHc_RecQ 8 201 - -
Gso18g0435 920 CDD SF2_C_RecQ 202 337 - -
Gso18g0435 920 Pfam DEAD/DEAH box helicase 21 180 IPR011545 GO:0003676|GO:0005524
Gso18g0435 920 SMART ultradead3 15 210 IPR014001 -
Gso18g0435 920 Pfam RecQ zinc-binding 351 402 IPR032284 -
Gso18g0435 920 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 8 460 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0435 Gso-Chr18 4259120 4276241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0435 14 344 Eukaryotic Initiation Factors Gene Family AT3G19760 21.591 9.69e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0435 K03654 - gmx:100797777 1839.7