Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0417 ATGAAGCTTTCAACATCAGGGTTGGGGCAGCAGGGACATGAAGGAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGCCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAAACGGATGAAGTATATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAGGATACATTTCTTTCTATGGAATTGGGCATTCCAAGTAAGCAGCCGTCAAATTATTTTTGCAAGACATTAACGGCCAGTGACACCAGCACGCATGGGGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCACTGGATTTCTCGCTGCAACCACCAGCACAGGAACTAATTGCTAGGGATCTCCATGATGCTGAATGGAAATTTCGACATATTTTTCGAGGACAGCCAAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTGGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAACCAGCTCCTTTTGGGAATACGTCGTGCCAATAGACCGCAAACTGTAATGCCGTCATCAGTTCTATCCAGTGATAGCATGCATATTGGACTTCTTGCAGCTGCTGCCCATGCTGCCGCAACCAATAGCTGTTTTACTGTGTTTTATAATCCAAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGGTATATGGGTACAATAACTGGCATAAGTGATTTGGATTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCGATGTATCCATCATTATTTCCCCTCAGACTGAAACGTCCATGGCATCCTGGCACCTCATCTTTGCATGATGGGAGAGATGAAGCTACTAATGGGCTAATGTGGATGAGAGGTGGACCTGTAGACCAAGGTCTCAATTCCCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACTTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTACAGAACTTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAGCAGCCTTACCACTATCTTCAACAATCTGGAAACAGTAATTCTCCTTTGCAACTTCAGCAGCAGCAACCAATTCAACAATCTGTGTCTTCTAACATGCTGCAGCCACAAGCTCACGTGTTGACAGAGAACCTCTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGTCCAAGCACAACAGCAGCAACATACTTATCAAGACTCGCTCTTAATTCCGAGTGATCAACTCCATCAGAGACAACACTCTGGCATTCCTTCACCATCATATTCAAAACCGGATTTCTTGGATTCGAGCATGAAGTTCCCTGCTTCAGTTTCTCCCGGGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGCAGTCTCTTGAATTTATCGAGGAGCAGTCTGTCCTTGCTGACTGAACAGTTACCGCAACAGCAATGGACTCAAAAATATGCACCTGTGCAGGTCAACACCTATGGAGGCACTGTGTCACATGCACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATTGTAACTCGGATGCCCAAAATTCTACGCTTTTTGGTGTCAATATTGATTCATCTGGCCTTCTCCCCATCACAGTCCCTGGTTACACCACCTCGTCTGCTGACACTAATTCATCAACAATGCCATTAGCGGATTCTGGTTTCCAGGGTTCTCTATATGGTTGCATGGATTCATCGGAGTTGTTGCAAAGCGCAGGGCATGTTGACCCAGAAAACCAGAGTCAAACCTTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATATCCAGGTTCAGCAGCTATCATGAACTACGCGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAATGATGTTCTTCTCCTTGGAGATGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCGGTAGAATCCCTTGCATTAGGTTCAGGACAAAGGCTAAATGGCACTGGTGCCGAGTCTCAGGACATAGTTTCTGGACCACCATCAATTGGCTCACTTGAGTACTGA 2526 0.4557 MKLSTSGLGQQGHEGGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLSMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSLQPPAQELIARDLHDAEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSLHDGRDEATNGLMWMRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPYHYLQQSGNSNSPLQLQQQQPIQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQHTYQDSLLIPSDQLHQRQHSGIPSPSYSKPDFLDSSMKFPASVSPGQNMLSSLCPEGSGSLLNLSRSSLSLLTEQLPQQQWTQKYAPVQVNTYGGTVSHAQYSGKDSAMVLPHCNSDAQNSTLFGVNIDSSGLLPITVPGYTTSSADTNSSTMPLADSGFQGSLYGCMDSSELLQSAGHVDPENQSQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0417 841 Pfam AUX/IAA family 712 799 IPR033389 -
Gso18g0417 841 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Gso18g0417 841 SUPERFAMILY DNA-binding pseudobarrel domain 113 257 IPR015300 -
Gso18g0417 841 Gene3D - 126 229 IPR015300 -
Gso18g0417 841 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 826 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso18g0417 841 Gene3D - 292 364 - -
Gso18g0417 841 SUPERFAMILY CAD & PB1 domains 711 789 - -
Gso18g0417 841 MobiDBLite consensus disorder prediction 470 494 - -
Gso18g0417 841 Gene3D - 711 804 - -
Gso18g0417 841 CDD B3_DNA 127 228 IPR003340 GO:0003677
Gso18g0417 841 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso18g0417 841 MobiDBLite consensus disorder prediction 819 833 - -
Gso18g0417 841 PANTHER AUXIN RESPONSE FACTOR 1 826 - -
Gso18g0417 841 SMART B3_2 128 230 IPR003340 GO:0003677
Gso18g0417 841 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Gso18g0417 841 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Gso18g0417 841 MobiDBLite consensus disorder prediction 819 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0417 Gso-Chr18 4154198 4161702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0417 98 807 B3 DNA Binding Superfamily AT5G37020 67.822 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso18g0417 AUX_IAA 9e-08 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0417 18 4154198 4161702 Gso14g1763 14 49909512 49917803 PCT
Gso18g0417 18 4154198 4161702 Gso2g2038 2 44988234 44999250 PCT
Gso14g1763 14 49909512 49917803 Gso18g0417 18 4154198 4161702 PCT
Gso2g2038 2 44988234 44999250 Gso18g0417 18 4154198 4161702 PCT