LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso18g0413	ATGCAACTGATGAAGGTGGTAGCCTTAACCTTGTTGGTGTTGTGGTCACGGTGGAGCTTTGAGGGTGCAGTTGGAGACCCTCAACTCTTTTTACTCAAATGGGAGTGCACCGTAGTCAAGGTACGCGATTTGTCCAACTTCCACCAAAATCTAAATGCAAGTTTGGCAGATCTTAGAGTGCAGGTGAGCAACCAAAGCAAGCACTTCGCCACGGCGCAATCAACCACCGGAACAGACCCTGTCTTTGCCATGTTCCAATGTAGGAACTACCTTTCCAACACTGACTGCACCAACTGTTTTGCTGCTGCTGCCGCCAGAATACGTAACTGTTCCACTGGAAATACTGCCCGCGTCGTTTATGACGGTTGCTTCCTCAGGTACGGCAACAATGAGTTCTTGGACCGCAGTCTCATTATTTCTAGCAGCGACACGCTTTGTGGAAATCAGACTGTAGATGAAAGCACTGCTTTTGGTACAGTTGGACGTCAAGTGCTGATGGATTTACAAAAAGCGACACCCAAAATTAGTGGCTACTTTGCAGCTACCAAGACACAAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCTGAAACTCTCACACAACTCACTTGCTTGGATTGTTTGTCAATTGAACAAAGTGGCATACAAGATTGTCTTCCAAATACAAATGGTCGGGGAGTCGATCCTCAAGTGTGCTTTATGAGATACTCGGAGACACCTTTCTTTGCAGATAACCAAACCATTGATATCAGTCCCTTCTTAAAACAAGGAGGAGGAGGTTCAATTAAGAAGTGGGTTGTTATTGGTGGTGGTCTTGCAGGTGCACTCCTTGTTGTGATCCTTATTTCATTATTTTGGTGGCATAGAAGATCCCAAAGTCCAAAGAGAGTTTCTAGAAGTACCATAATGGGAGCAACTGAGCTGAAAGGTCCAACCAGGTACAAGTATAATGACTTGAAAGCTGCAACGAAAAAATTTAGTGAGAAAAATAAACTTGGAGAAGGAGGCTTTGGTGCTGTATACAAGGGGACTATGAAAAATGGGAAAGTTGTTGCAGTCAAAAAATTAATTTCAGGAAATTCCAGCAACATAGATGATGAATTTGAAAGTGAAGTAATGCTTATAAGTAATGTTCATCATAGAAATCTTGTTCGGCTCCTTGGTTGTTGCAGTAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACGCCAGCCTAGACAAATTCTTATTTGGAAAAAGAAAAGGCTCCCTCAACTGGAAACAACGCTATGATATAATTTTGGGAACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTTTCTATCATACATAGAGATATTAAGAGTGGCAATATCCTCTTGGATGAAGAACTTCAACCCAAAATATCTGATTTTGGGTTGGTGAAGCTCCTACCAGGGGACCAATCTCATCTTAGCACAAGATTTGCTGGGACATTGGGATACACAGCACCTGAGTATGCACTCCATGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTCCTAGAAATTATAAGTGGTCAAAAGAGTATTGATGCCAAGGTTGTTGATGATGATGATGAGGATGAATACCTTCTTCGACAAGCGTGGAAGTTGTATGAGAGAGGCATGCACGTGGAGTTAGTAGACAAAAGCTTAGACTCTAATAGCTATGATGCAGAAGAAGTGAAGAAAGTCATAAGCATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCAGCCATGTCTGAAGTAGTAGTCCTACTCAGTAGTAATGACTTACTTGAGCATATGAGACCTTCGATGCCTATCTTTATTGAGTCAAATTTAAGGCCCCACAGAGATATCTCTGCTTCGACTGGTTCCTCTACTACTTATGCTACGGCCTCCAATTCTATAGTACCGGCTCGATGA	1953	0.427	MQLMKVVALTLLVLWSRWSFEGAVGDPQLFLLKWECTVVKVRDLSNFHQNLNASLADLRVQVSNQSKHFATAQSTTGTDPVFAMFQCRNYLSNTDCTNCFAAAAARIRNCSTGNTARVVYDGCFLRYGNNEFLDRSLIISSSDTLCGNQTVDESTAFGTVGRQVLMDLQKATPKISGYFAATKTQVAGGAIYAIAQCAETLTQLTCLDCLSIEQSGIQDCLPNTNGRGVDPQVCFMRYSETPFFADNQTIDISPFLKQGGGGSIKKWVVIGGGLAGALLVVILISLFWWHRRSQSPKRVSRSTIMGATELKGPTRYKYNDLKAATKKFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGNSSNIDDEFESEVMLISNVHHRNLVRLLGCCSKGQERILVYEYMANASLDKFLFGKRKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDEELQPKISDFGLVKLLPGDQSHLSTRFAGTLGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKSIDAKVVDDDDEDEYLLRQAWKLYERGMHVELVDKSLDSNSYDAEEVKKVISIALLCTQASAAMRPAMSEVVVLLSSNDLLEHMRPSMPIFIESNLRPHRDISASTGSSTTYATASNSIVPAR*	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso18g0413	650	Pfam	Protein kinase domain	328	541	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g0413	650	MobiDBLite	consensus disorder prediction	630	650	-	-
	Gso18g0413	650	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	18	636	-	-
	Gso18g0413	650	ProSitePatterns	Protein kinases ATP-binding region signature.	334	357	IPR017441	GO:0005524
	Gso18g0413	650	CDD	STKc_IRAK	334	599	-	-
	Gso18g0413	650	Pfam	Salt stress response/antifungal	149	240	IPR002902	-
	Gso18g0413	650	Pfam	Salt stress response/antifungal	40	129	IPR002902	-
	Gso18g0413	650	SUPERFAMILY	Protein kinase-like (PK-like)	312	622	IPR011009	-
	Gso18g0413	650	Gene3D	Phosphorylase Kinase; domain 1	300	404	-	-
	Gso18g0413	650	ProSiteProfiles	Gnk2-homologous domain profile.	29	132	IPR002902	-
	Gso18g0413	650	Gene3D	Transferase(Phosphotransferase) domain 1	405	612	-	-
	Gso18g0413	650	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	449	461	IPR008271	GO:0004672\|GO:0006468
	Gso18g0413	650	SMART	serkin_6	328	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g0413	650	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	18	636	-	-
	Gso18g0413	650	Gene3D	-	30	132	IPR038408	-
	Gso18g0413	650	Gene3D	-	140	243	IPR038408	-
	Gso18g0413	650	ProSiteProfiles	Protein kinase domain profile.	328	608	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gso18g0413	650	ProSiteProfiles	Gnk2-homologous domain profile.	139	243	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso18g0413	Gso-Chr18	4092071	4102094	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso18g0413	9	645	Receptor kinase-like Gene Family	AT1G70520	36.462	4.12e-120	370

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Gso18g0413		Pkinase	6e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso18g0413	-		-	gmx:100777409	1252.27