Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0412 ATGATGCTGCAGCAACTTATTAAGCTCCTAGCCTTAAATTTGATATGGTGGAGCAGTATTAATGTTGAATATGCAGTTGCAGCCACACGTGACACACGTGTGATAAACTCTGGGTGCAGCCCAATCAACGCTACCAACACGGTTAGCTTCTTTGGGAATGTCAATGAGACATTCTCAGAGCTGAGAGGAGAAATTAGGAACCAAAGCAAGCACTTTGGCACATCATTGAACTCCAGAGGAGCTGTCAATGCATATACTATGTTTCAATGCAGAAACTATGTCTCCAGAAATGACTGTCTTGCTTGCTTCAACACTGCCTCCGCCCAAATCCGGGATATATGCAAAATAGCCAACGGTGCCAGAGTCATCTACAATGACTGCTTCCTCAGGTATGAGAGTGAGAGATTCTACCAACAGACCAACGAAATTGGTGGAGGGGTAACATGTGGGAACATCAGTTCAAATGCCACTAATTTAAAAGTAGTTGGACAACAAGCATTAATGGACCTTCAAACAGCAACACCTAAAATTAAAGGTTTCTATGCAGCTACTAAGACACAGGTGGAGGGTGGTAGTGCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCTCCCCACAGAAATGTCTGGATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGCCTTCCAAGCACAGATGGTACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCAAACCTTTCTTTGCTGATAATCAGACCATTGATATCAAACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCTATTATTGGTGGTGTCGTAGGAGGTGTTGTTCTCCTCCTTGTGTTGTTTGCTTGGAGATTGTTTATTAAACAAAAGAGGGTTCCCAAAGCTGACATATTGGGAGCAACTGAGTTGAGAGGTCCAGTTAACTACAAGTATACAGATTTGAAAGCTGCAACAAAAAATTTCAGTGCTGACAATAAACTTGGAGAAGGAGGTTTTGGCGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCCGTCAAGAAACTAGTGTTGGGGAAATCAAGCAAGATGGAGGATGATTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGAAATCTCGTTAGACTTCTTGGTTGTTGCAGCAAAGGCCAAGAGAGAATTCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTCTTATTTGGTGACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATTTTGGGAACAGCAAGGGGACTAGCATATCTACATGAGGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACTGGTAATATCCTCCTAGATGATGATCTCCAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTGCCAAGGGATCGTTCTCATCTTAGCACAAAATTTGCCGGAACATTGGGATACACAGCACCTGAGTATGCAATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGTTATGGTATTGTGGTTCTGGAAATCATAAGTGGTCAAAAGAGTACCAATGTGAAGATTGATGACGAGGGTCGTGAGTACCTTCTTCAACGGGCATGGAAACTGTATGAGAAAGGCATGCAGTTGGAGCTTGTGGACAAGGACATAGACCCTGATGAATATGATGCAGAAGAAGTGAAGAAAATCATTGAAATTGCTTTATTATGCACTCAAGCATCAGCTGCAACAAGGCCAACAATGTCTGAATTAGTAGTGCTACTCAAAAGCAAGAGCTTAGTGGAGCAACTGCGACCAACTATGCCTGTGTTTGTTGAAACAAATAAGATGAATGGGGAAGGCATCTCTGATGATCCATCTAATGCTACTATCTCCATTTCTGTTCTATCGGCCCGATGA 1923 0.4176 MMLQQLIKLLALNLIWWSSINVEYAVAATRDTRVINSGCSPINATNTVSFFGNVNETFSELRGEIRNQSKHFGTSLNSRGAVNAYTMFQCRNYVSRNDCLACFNTASAQIRDICKIANGARVIYNDCFLRYESERFYQQTNEIGGGVTCGNISSNATNLKVVGQQALMDLQTATPKIKGFYAATKTQVEGGSAIYAIAQCVETASPQKCLDCMQVGYNNLQSCLPSTDGTAYDAGCFMRYSTKPFFADNQTIDIKPYLKEGGSSKKWAIIGGVVGGVVLLLVLFAWRLFIKQKRVPKADILGATELRGPVNYKYTDLKAATKNFSADNKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPRDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEIISGQKSTNVKIDDEGREYLLQRAWKLYEKGMQLELVDKDIDPDEYDAEEVKKIIEIALLCTQASAATRPTMSELVVLLKSKSLVEQLRPTMPVFVETNKMNGEGISDDPSNATISISVLSAR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0412 640 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 14 636 - -
Gso18g0412 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Gso18g0412 640 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 14 636 - -
Gso18g0412 640 SMART serkin_6 324 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0412 640 ProSiteProfiles Gnk2-homologous domain profile. 140 245 IPR002902 -
Gso18g0412 640 Pfam Salt stress response/antifungal 167 242 IPR002902 -
Gso18g0412 640 Pfam Salt stress response/antifungal 43 133 IPR002902 -
Gso18g0412 640 Gene3D Transferase(Phosphotransferase) domain 1 401 609 - -
Gso18g0412 640 ProSiteProfiles Gnk2-homologous domain profile. 32 136 IPR002902 -
Gso18g0412 640 CDD STKc_IRAK 330 597 - -
Gso18g0412 640 Gene3D Single helix bin 258 292 - -
Gso18g0412 640 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524
Gso18g0412 640 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Gso18g0412 640 Pfam Protein tyrosine and serine/threonine kinase 326 594 IPR001245 GO:0004672|GO:0006468
Gso18g0412 640 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Gso18g0412 640 ProSiteProfiles Protein kinase domain profile. 324 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0412 640 Gene3D - 147 245 IPR038408 -
Gso18g0412 640 Gene3D - 31 136 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0412 Gso-Chr18 4076385 4081295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0412 33 638 Receptor kinase-like Gene Family AT1G70520 36.893 1.36e-127 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g0412 PK_Tyr_Ser-Thr 4.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0412 - - gmx:112997608 1238.79