Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0411 ATGCCTCGCAGCAGCATACTTTGTGGAAATCATACAGCAGATGAAAGCACAACTTTCAGTGAAGCTGGACAGCAAGTGTTGATGGATCTACAGATAGCAACACCAAAAATTACTGGCTTCTATGCAGCTACCAAGACACAAGTGGCTGGTGGTGCAATCTATGCCATTGCACAATGTGCAGAAACTCTCACACAAGATAGTTGTTTGGATTGCTTGTCAGTTGAACATAGCAGCATACAAGGTTGTCTTCCCAAAACAAATGGTAGGGCATTCGATGCTGGGTGCTTTATGAGATACTCGGAGACACCCTTCTTTGCTGATAACCAAACCATTGATATCAACCCCTTCTTAAAACAAGGAGGAAGTCCAAGCAAGAAGTGGGCAATTTTTGGTGGTGGTGTTGGAGGTGCAGTCCTTGTTGTGACCCTTCTTTCATTATTTCTCCGGTGGCGTAGAAGATCCCAAAGTCCCAAGAGAGCTCCTAGAGGTAACATATTGGGAGCAACTGAGTTGAAAGCTGCAACCAAGTACAAGTATAGTGACTTGAAAGTTGCAACAAAAATTTTTAGTGAGAAAAATAAGCTAGGAGAAGGAGGCTTTGGCGCTGTATACAAGGGGACAATGAAAAATGGGAAAGTTGTTGCAGTCAAAAAGTTAATTTCAGGAAAATCCAACAAGATAGATGACGATTTTGAAAGTGAAGTAATGCTTATAAGTAATGTTCACCACAGAAATCTGGTTCAACTTCTTGGTTGTTGTAGTAAAGGCCAAGACAGAATTCTTGTTTACGAATACATGGCAAACAACAGCCTTGACAAATTCTTATTTGGTAAAAGAAAAGGTTCACTCAACTGGAGACAACGCTTAGATATAATTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTCATGTGTCTATCATACATAGAGATATTAAGAGTGGGAATATCCTCTTGGATGAACAACTTCAGCCTAAAATTTCTGATTTTGGGTTGGTGAAGCTCCTTCCAGGGGACCAATCTCATCTTAGCACAAGATTTGCAGGGACAATGGGATACACAGCACCTGAGTATGCACTTCACGGTCAATTATCAGAAAAGGCTGATACATACAGCTATGGAATTGTAGTGCTAGAAATCATTAGTGGTCAAAAGAATATTGATGTGAAGGTTGTTGATGATGATGATGGTGAGGATGAATACCTTCTTCGACAAGCATGGAAGTTGTATGAGAGAGGCATGCACTTGGATTTAGTGGACAAAAGCTTAGACCCTAATAACTATGATGCAGAAGAAGTGAAGAAAGTTATAGACATTGCTTTGTTGTGCACTCAAGCATCGGCTGCAATGAGGCCAACCATGTCTAAAGTAGTAGTTCTACTTAGTAGCAATTACTTTGTTGAGCATATGAAACCTTCAATGCCTATCTTTATTGAGTCGAATTTGAGGTCCCATAGAGATATCTCTGCTTGA 1482 0.4062 MPRSSILCGNHTADESTTFSEAGQQVLMDLQIATPKITGFYAATKTQVAGGAIYAIAQCAETLTQDSCLDCLSVEHSSIQGCLPKTNGRAFDAGCFMRYSETPFFADNQTIDINPFLKQGGSPSKKWAIFGGGVGGAVLVVTLLSLFLRWRRRSQSPKRAPRGNILGATELKAATKYKYSDLKVATKIFSEKNKLGEGGFGAVYKGTMKNGKVVAVKKLISGKSNKIDDDFESEVMLISNVHHRNLVQLLGCCSKGQDRILVYEYMANNSLDKFLFGKRKGSLNWRQRLDIILGTARGLAYLHEEFHVSIIHRDIKSGNILLDEQLQPKISDFGLVKLLPGDQSHLSTRFAGTMGYTAPEYALHGQLSEKADTYSYGIVVLEIISGQKNIDVKVVDDDDGEDEYLLRQAWKLYERGMHLDLVDKSLDPNNYDAEEVKKVIDIALLCTQASAAMRPTMSKVVVLLSSNYFVEHMKPSMPIFIESNLRSHRDISA* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0411 493 CDD STKc_IRAK 195 461 - -
Gso18g0411 493 SMART serkin_6 189 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0411 493 Gene3D Transferase(Phosphotransferase) domain 1 266 474 - -
Gso18g0411 493 Pfam Salt stress response/antifungal 12 101 IPR002902 -
Gso18g0411 493 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 5 477 - -
Gso18g0411 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gso18g0411 493 ProSiteProfiles Gnk2-homologous domain profile. 1 104 IPR002902 -
Gso18g0411 493 Gene3D Phosphorylase Kinase; domain 1 165 265 - -
Gso18g0411 493 ProSiteProfiles Protein kinase domain profile. 189 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0411 493 Pfam Protein tyrosine and serine/threonine kinase 192 462 IPR001245 GO:0004672|GO:0006468
Gso18g0411 493 Gene3D - 4 104 IPR038408 -
Gso18g0411 493 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 477 - -
Gso18g0411 493 SUPERFAMILY Protein kinase-like (PK-like) 175 478 IPR011009 -
Gso18g0411 493 ProSitePatterns Protein kinases ATP-binding region signature. 195 218 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0411 Gso-Chr18 4067992 4070808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0411 2 490 Receptor kinase-like Gene Family AT1G70520 40.040 4.38e-109 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g0411 PK_Tyr_Ser-Thr 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0411 - - gmx:100776342 935.25