Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0409 ATGATTCTTCAACTTAAACTTTTGGCCTTAAGTTTGATATGGTGGAGCAGTATTAATGTTGAATATGCAGTTGCAGCCACACGTAACCCACGTCTAATAAACACTGGGTGTAGCCAAGTTAACGCTTCCAACCCGGGTAGCTTCTTTGCAAATGTCAATGATTCGATCTTAGAGATGAGAGAAGAAATTAGCAATGATAACAAGCACTTTGGCACAGCATATAAAGCCAGGGGAGAGGTGCTAACATATGCTATGTTTCAATGCAGAAACTATGTCTCCAAAAATGACTGTCTTGCTTGCTTCAACACGGCCTCCACCCAAATTCGCAACTGCTCCAAAGCCAACGGCGCCAGAGTCATCTACAATGACTGCTTCCTCAGGTATGAGAGTGAGAGGTTCTACCAACAGACGAATGAAATTGGTGGTGGGGTAACATGTGGGAACAAGAGTTCAAATGCCACAGGTTTTAGAGCAGTTGGACAACAAGCACTAGTGGACCTTCAAACAGCAACACCTAAAATTAAAGGTTTCTATGCAGCTACTAAGACACAGGTGGAGGGTGGTAGTGCAATTTATGCCATTGCACAGTGTGTTGAAACTGCCTCCCCACAGAAATGTCTGGATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGCCTTCCAAGCACAGATGGTACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACCATTGATATCAGACCCTATTTAAAAGAAGGAGGTTCAAGCAAGAAGTGGGCTATTATAGGTGGTGTCGTAGGAGGTGTTGTTCTCCTCCTTCTGTTGTTTGCTTGGAGATTGTTTACAAAACCAAAGAGGGTTCCCAAAGCTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTTCAAGTATAAAGATTTGAAAGCTGCAACAAAAAATTTCAGTGCTGACAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTCAAGAAACTAGTGTTGGGGAAATCAAACAAGATGAAGGATGATTTTGAAAGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGAAATCTCGTTAGACTTCTTGGCTGTTGCAGCATAGGCCAAGAGAGAATCCTAGTTTATGAATACATGGCAAATAGCAGCCTTGACAAATTTTTATTTGGTGACAAAAAAGGTTCCCTCAATTGGAAACAACGCTATGATATAATTTTAGGCACAGCAAGGGGACTAGCATATCTACATGAGGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACCGGTAATATCCTTCTAGATGATGATCTACAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTTTGCCAAAGGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACACTGGGATACACAGCACCTGAGTATGCAATGCAAGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTGGTCCTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGATTAGTGACGAGGGTCGTGAGTACCTTCTTCAACGAGCATGGAAACTGTATGAGAGAGGCATGCAGTTGGATCTTGTGGACAAGCGCATAGAACTTAATGAATATGACGCAGAAGAAGTGAAGAAAATCATAGAAATTGCGTTATTATGCACGCAAGCATCAGCTGCAACAAGGCCAACAATGTCTGAATTAGTAGTGCTGCTCAAAAGCAAGGGCTTAGTGGAGGACTTGCGACCAACTACGCCTGTGTATGTTGAAACGAATATGATGAACCGGGAAAGCATCTCTACTGGTTCTCCATCCAATGCTACTATTTCCATTTCTGTTCTATCAGCCCGTTGA 1917 0.4178 MILQLKLLALSLIWWSSINVEYAVAATRNPRLINTGCSQVNASNPGSFFANVNDSILEMREEISNDNKHFGTAYKARGEVLTYAMFQCRNYVSKNDCLACFNTASTQIRNCSKANGARVIYNDCFLRYESERFYQQTNEIGGGVTCGNKSSNATGFRAVGQQALVDLQTATPKIKGFYAATKTQVEGGSAIYAIAQCVETASPQKCLDCMQVGYNNLQSCLPSTDGTAYDAGCFMRYSTTPFFADNQTIDIRPYLKEGGSSKKWAIIGGVVGGVVLLLLLFAWRLFTKPKRVPKADILGATELKGPVNFKYKDLKAATKNFSADNKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSNKMKDDFESEVKLISNVHHRNLVRLLGCCSIGQERILVYEYMANSSLDKFLFGDKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPKDRSHLSTKFAGTLGYTAPEYAMQGQLSEKADTYSYGIVVLEIISGQKSTDVKISDEGREYLLQRAWKLYERGMQLDLVDKRIELNEYDAEEVKKIIEIALLCTQASAATRPTMSELVVLLKSKGLVEDLRPTTPVYVETNMMNRESISTGSPSNATISISVLSAR* 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0409 638 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Gso18g0409 638 Pfam Salt stress response/antifungal 149 239 IPR002902 -
Gso18g0409 638 SMART serkin_6 321 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0409 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gso18g0409 638 SUPERFAMILY Protein kinase-like (PK-like) 305 617 IPR011009 -
Gso18g0409 638 ProSiteProfiles Gnk2-homologous domain profile. 138 242 IPR002902 -
Gso18g0409 638 Pfam Protein tyrosine and serine/threonine kinase 323 591 IPR001245 GO:0004672|GO:0006468
Gso18g0409 638 CDD STKc_IRAK 327 594 - -
Gso18g0409 638 ProSiteProfiles Gnk2-homologous domain profile. 30 133 IPR002902 -
Gso18g0409 638 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 634 - -
Gso18g0409 638 Gene3D Transferase(Phosphotransferase) domain 1 398 601 - -
Gso18g0409 638 ProSiteProfiles Protein kinase domain profile. 321 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0409 638 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 13 634 - -
Gso18g0409 638 Gene3D - 144 242 IPR038408 -
Gso18g0409 638 Gene3D - 29 133 IPR038408 -
Gso18g0409 638 Gene3D Phosphorylase Kinase; domain 1 295 397 - -
Gso18g0409 638 ProSitePatterns Protein kinases ATP-binding region signature. 327 350 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0409 Gso-Chr18 4055523 4061959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0409 2 638 Receptor kinase-like Gene Family AT1G70520 36.294 1.35e-128 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g0409 PK_Tyr_Ser-Thr 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0409 - - gmx:100801131 1224.92