Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0394 ATGAATTTAAAACTCGTTGCTCTTCCAGCAAGAATCATTGTTGCACCACCACCCGTCCCTAATGGTTCTACTCCTTCTGCTATTAAAACCCGCATGTGTAACAAATTCAATACTGTTGAAGGATGCAAATTTGGCGACAAGTGTCATTTTGCATTTTTTCCCATGCATGTTGAGTGGAGTAAGATCCAGACGCCTACGGATCAAGTAGTGGTGCCTTATGACACTTTGGCACCAATTCCTGATGATGGGGAGTGGAGAAACTGTTTGTTGATTTGGTTCTTCAGAGGTGAAGAACCTCTTGGACAAGCTTGTGGTGTTGAAGCTCAATGGAGGCTTGGGGACAACTATGGGTTGTACTGGCCCAAACTCCTGGAAATTGCCCAAGTCCTAGATGACCATGTCAGTGAATTTAAGTCTATAGAGAAATTCAAAATTTTCAACACAAATAATTTGTGGGTAAACTTAAAAGCAGTTAAAAGGCTTGTTGAAGCTGATGCTCTGAAGATGGAAATTATTCCCAATCCAAAGGAAGTTGATGGAGTAAAAGTTCTTCAACTGGAAAATGCAGCTGGTGCAACAATAAGGTTCTTTGACAAAGCTATTGGAATTAATGTGCCTCGATCCCGCTTCCTTCCCGTGAAGGCAACTTCAGACTTGCTTCTTGTCCAGTGGGACCTTTACACTTTACAAGATGGATTGGTTATTAGGAACCAAGCTAGGGCAAATCCTGAAAATCCTTCCATTGAATTGGGGCCAGAATTTAAGAAGGTTAGCTACTTCTTGAGCCGGTTCAAGTCAATCCCCAGTATTGTTGAGCTTGATAGTCTAAAAGTGGCAGGGGATGTATGGTTTGGAGTTGGTGCAATCCTTAAGTCAGAGTTGCGTGATAGTACTTTAGGAGCTCAGAAATCTCTGCAAAGAGTTCTTTTTTTCAAGATTTGA 942 0.4172 MNLKLVALPARIIVAPPPVPNGSTPSAIKTRMCNKFNTVEGCKFGDKCHFAFFPMHVEWSKIQTPTDQVVVPYDTLAPIPDDGEWRNCLLIWFFRGEEPLGQACGVEAQWRLGDNYGLYWPKLLEIAQVLDDHVSEFKSIEKFKIFNTNNLWVNLKAVKRLVEADALKMEIIPNPKEVDGVKVLQLENAAGATIRFFDKAIGINVPRSRFLPVKATSDLLLVQWDLYTLQDGLVIRNQARANPENPSIELGPEFKKVSYFLSRFKSIPSIVELDSLKVAGDVWFGVGAILKSELRDSTLGAQKSLQRVLFFKI* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0394 313 SUPERFAMILY CCCH zinc finger 27 51 IPR036855 GO:0046872
Gso18g0394 313 Gene3D - 21 52 - -
Gso18g0394 313 PANTHER - 55 82 IPR016267 GO:0003983|GO:0006011
Gso18g0394 313 PANTHER - 122 293 IPR016267 GO:0003983|GO:0006011
Gso18g0394 313 ProSiteProfiles Zinc finger C3H1-type profile. 27 59 IPR000571 GO:0046872
Gso18g0394 313 Pfam UTP--glucose-1-phosphate uridylyltransferase 122 291 IPR002618 GO:0070569
Gso18g0394 313 SUPERFAMILY Nucleotide-diphospho-sugar transferases 98 291 IPR029044 -
Gso18g0394 313 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 94 213 IPR029044 -
Gso18g0394 313 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 55 82 - -
Gso18g0394 313 PANTHER UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 122 293 - -
Gso18g0394 313 Gene3D Hexapeptide repeat proteins 214 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0394 Gso-Chr18 3902494 3909446 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso18g0394 UDPGP 1.6e-65 CL0110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0394 K00963 - gmx:102661410 523.472