Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0393 ATGGGTTCTTGGGCTACATCATCTGTTCTGGCTAATCAATTTATTCCATGGTCTACAACCAATTCTGAATCTGCCATCGACTCCAAATTGGGTGTCGTTTTTTACAAAATGTACAGAAATACAAACAAAAGACAACTCAGTCTCGCTTTTGCTTGGGATAATTGTAAAGTTAGAAGTATTGGTGCAATTAAATCATACAAAGATGTATCTTATTTTCAAACCGAACTAGTAGGAACTTGGGAAGAACCCGATACTGGAAGTGACAGTGAGGGTGATGATGAAGAATATGAGGAAGTTGAAGATGAGAATTTTGGATTTGAAAGTGGTTCAGGAGAGGAAGGGATGAAGACTTCAGTTGTTACTGATGTTAATATAACTTCAGGGGACAACTATGAAGAACTTATTAAGAAAGAGATTGAACAGCTTTTGGAACCTGGAGAAAGAGCAATATTGAAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACCGCAAAATGGAGCCCACTGCACACTCTTGTGCTATCAATGCAGATGAGTTGTGTGGATAAGCTTCTTGAAAATGGTGTTGATATTGATTTACCTGATAAGGAAGGTCTTACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCAGTGATTAGCCATCTTTTACGAAGAGGTGCAAGTCCTCATGTTATGGATAAGGATGGAGCCACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAGTACAAGGTTGATGTCAATGTTGAAGATAATGAAGGTTGGACCCCCTTGCACGTTGCCATTCAAAGCAGAAATAGAGATATAGCAAAAATATTGTTAGTCAATGGTGCTGATAAGAATAGGAAAAATAAGGACGGAAAAACAGCCCTGGATCTAAGCTTATGTTATGGGAAAGATTTCAAGTCTTATGACCTTGCCAAATTACTGAAGACGGTTCCAGCTGACAGTGATCTATTCTGA 996 0.3795 MGSWATSSVLANQFIPWSTTNSESAIDSKLGVVFYKMYRNTNKRQLSLAFAWDNCKVRSIGAIKSYKDVSYFQTELVGTWEEPDTGSDSEGDDEEYEEVEDENFGFESGSGEEGMKTSVVTDVNITSGDNYEELIKKEIEQLLEPGERAILKQNVTPNLEKISTAKWSPLHTLVLSMQMSCVDKLLENGVDIDLPDKEGLTALHKAIIGKKEAVISHLLRRGASPHVMDKDGATPLHYAVQVGAKMTVKLLIKYKVDVNVEDNEGWTPLHVAIQSRNRDIAKILLVNGADKNRKNKDGKTALDLSLCYGKDFKSYDLAKLLKTVPADSDLF* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0393 331 Gene3D - 132 232 IPR036770 -
Gso18g0393 331 SMART ANK_2a 165 194 IPR002110 GO:0005515
Gso18g0393 331 SMART ANK_2a 264 293 IPR002110 GO:0005515
Gso18g0393 331 SMART ANK_2a 231 260 IPR002110 GO:0005515
Gso18g0393 331 SMART ANK_2a 297 330 IPR002110 GO:0005515
Gso18g0393 331 SMART ANK_2a 198 227 IPR002110 GO:0005515
Gso18g0393 331 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 103 323 - -
Gso18g0393 331 ProSiteProfiles Ankyrin repeat region circular profile. 264 296 - -
Gso18g0393 331 ProSiteProfiles Ankyrin repeat region circular profile. 198 230 - -
Gso18g0393 331 Gene3D - 233 313 IPR036770 -
Gso18g0393 331 Pfam Ankyrin repeats (many copies) 167 214 IPR002110 GO:0005515
Gso18g0393 331 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Gso18g0393 331 ProSiteProfiles Ankyrin repeat region circular profile. 231 263 - -
Gso18g0393 331 ProSiteProfiles Ankyrin repeat profile. 165 197 IPR002110 GO:0005515
Gso18g0393 331 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Gso18g0393 331 SUPERFAMILY Ankyrin repeat 157 321 IPR036770 -
Gso18g0393 331 Pfam Ankyrin repeats (3 copies) 231 295 IPR002110 GO:0005515
Gso18g0393 331 ProSiteProfiles Ankyrin repeat profile. 231 263 IPR002110 GO:0005515
Gso18g0393 331 PRINTS Ankyrin repeat signature 232 247 IPR002110 GO:0005515
Gso18g0393 331 PRINTS Ankyrin repeat signature 280 294 IPR002110 GO:0005515
Gso18g0393 331 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 103 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0393 Gso-Chr18 3892869 3897321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0393 150 305 Ion Channels AT2G25600 30.573 1.94e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0393 - - gmx:100818556 597.816