Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0392 ATGGCGATTCAAGATCAAAATGGATTTAACAGATCACAGGGTGGTCCTCCAATAGGAGGTGGAGTATCTTTGAGTTCTGGAGTGCATTCTGTCACACATATTCAACTTAGTGACCAGTTTTCTTGTGGCAACGACTATGCTCTGAAGGTAAGAAAGCCTTATACTATCACCAAACAGAGAGAGCGATGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTGTACGGACGGGCTTGGCGACGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGCTTCTTCGCGATCCTACTGGGAACAATACAAACACAGTGGAGTCAATTGAAATTCCTCCTCCAAGGCCGAAACGAAAGCCAGTGCATCCTTACCCTCGTAAACTAGTTGAGACCCCTAATAAAGAAATTTTGATCCCAGAACAACTTATGAAGTCTAATTCTCTGAAGTCATCAGACTTTGATCAAGAAAACCAATCTCCAAAATCAGTATTATCAGGAGTTGGTTCAGACAGCCTTGGCTCCTCTGATTCAGACACACCATATGGAAGTTTGTCGCCCATGTCATCCATTAGTGGCATCCATACAAGCAGTTTTACACGTGCTGAGCCCAAAACAACATCTGAGGAAGCTGGGATGGACACTGATTCAGCTCATGATGAGAAACCTCTTATGAAATTCAAGCTTCCTCCAAATGAATGTGTTTCCATCAAAGATGACACAGCAGAAGAATCTTCCGGTCGGACTTTCAAACTTTTCGGAATGACTCTATTTGTAACAGACACCTGCAAACCATCTCCAACAATCGAGGCATGCAAACCGATACCTCTAAACATTCGTGTGCGATGCCTTTCCTCCTCCATGGGGGATGATGGCAAATTGGAACTTCTTGGCCACTCTACAGCAAGTGAAACATCAGCAGTATCCAAGCTAAAGGTGAGAGTGGGACCTGAAGCATGTGGTAAAGGGTTTGTGCCATATAAAAGATGCATATCTGTTGTGACAGCTGATAATAGAGAAGAGCAATGCATCCATCTTTCCTTGTAG 1086 0.4309 MAIQDQNGFNRSQGGPPIGGGVSLSSGVHSVTHIQLSDQFSCGNDYALKVRKPYTITKQRERWTDEEHKKFLEALKLYGRAWRRIEEHVGTKTAVQIRSHAQKFFSKLLRDPTGNNTNTVESIEIPPPRPKRKPVHPYPRKLVETPNKEILIPEQLMKSNSLKSSDFDQENQSPKSVLSGVGSDSLGSSDSDTPYGSLSPMSSISGIHTSSFTRAEPKTTSEEAGMDTDSAHDEKPLMKFKLPPNECVSIKDDTAEESSGRTFKLFGMTLFVTDTCKPSPTIEACKPIPLNIRVRCLSSSMGDDGKLELLGHSTASETSAVSKLKVRVGPEACGKGFVPYKRCISVVTADNREEQCIHLSL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0392 361 MobiDBLite consensus disorder prediction 109 123 - -
Gso18g0392 361 MobiDBLite consensus disorder prediction 126 143 - -
Gso18g0392 361 Gene3D - 62 108 - -
Gso18g0392 361 SMART sant 59 107 IPR001005 -
Gso18g0392 361 MobiDBLite consensus disorder prediction 157 218 - -
Gso18g0392 361 ProSiteProfiles SANT domain profile. 58 112 IPR017884 -
Gso18g0392 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Gso18g0392 361 SUPERFAMILY Homeodomain-like 54 108 IPR009057 -
Gso18g0392 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Gso18g0392 361 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Gso18g0392 361 PANTHER SWI/SNF COMPLEX-RELATED 30 282 - -
Gso18g0392 361 MobiDBLite consensus disorder prediction 1 24 - -
Gso18g0392 361 PANTHER PROTEIN REVEILLE 7-RELATED 30 282 - -
Gso18g0392 361 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Gso18g0392 361 MobiDBLite consensus disorder prediction 220 236 - -
Gso18g0392 361 CDD SANT 62 105 IPR001005 -
Gso18g0392 361 MobiDBLite consensus disorder prediction 109 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0392 Gso-Chr18 3886232 3889628 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso18g0392 Myb_DNA-binding 7.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0392 - - gmx:780539 669.848