Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0391 ATGTCACAACAAACACTAACCATTCTTCTATTCACACTCCTCAGTCTTACTTCTTCACCAGCCACTTGCTTATACTCTTCTCCATCACCCCCTACCGCGCCATTTTCCGAATCTACCCCCCACACCGACCCTGAACCACGCGCCGAAGAATGGTTACCCGCCCACGCAACTCACTACGCCGCCACCGACGCGGTCGGCGGCGCGTGTGGTTACGGCGACCTCCTTAACGGCGGTTATGGCATGGCCACCGCCGCTCTCAGCGAAGCTCTCTTCGGGCGCGGCCAGATCTGCGGCGCCTGCTTCGAGGTCCGGTGCCGCGAGGAGGATTCCGACTTCGACCGGCGGTGGTGCATCTCCGGCACGACGGTCGCCGTCACCGCCACCAATTTCTGCGCCCCGAACTACGGTTCCGACGCGGAGAGCGTCGCCGGACACTGCAACCCTCCGAAGCAGCACTTGGTTCTCCCCATTGAAGCGTTCGAGAAAATCGCAATCTGGAAAACTGGCACTGGCAACATGCCCGTGGAGTATCGCAGGATAAAGTGTGCAAGGGAAGGGGGAATCCGGTTTACAATTACTGGTTCTGGAATATTCATTTCGGTACTGATTAGTAATGTGGCTGGAATTGGAGACATTGCTGCTGTGAAGGTTAAGGGTTCAAGAACTGGTTGGCTTCCAATGGGTAGGAATTGGGGTCAGAATTGGCATATTAATGCATTGCTACAGAACCAACCTCTTTCCTTTGAGGTTACAAGTAGTGATGGGATAACTCTTACATCTTACAATGTTGCTCCCAAGGATTGGAGCTTTGGACAATCTTTTGAAGGCAAGCAATTTGAGTCTTGA 846 0.5378 MSQQTLTILLFTLLSLTSSPATCLYSSPSPPTAPFSESTPHTDPEPRAEEWLPAHATHYAATDAVGGACGYGDLLNGGYGMATAALSEALFGRGQICGACFEVRCREEDSDFDRRWCISGTTVAVTATNFCAPNYGSDAESVAGHCNPPKQHLVLPIEAFEKIAIWKTGTGNMPVEYRRIKCAREGGIRFTITGSGIFISVLISNVAGIGDIAAVKVKGSRTGWLPMGRNWGQNWHINALLQNQPLSFEVTSSDGITLTSYNVAPKDWSFGQSFEGKQFES* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0391 281 PANTHER EXPANSIN-A13 33 280 - -
Gso18g0391 281 MobiDBLite consensus disorder prediction 25 39 - -
Gso18g0391 281 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 197 276 IPR007117 -
Gso18g0391 281 Pfam Lytic transglycolase 83 177 IPR009009 -
Gso18g0391 281 PRINTS Expansin signature 78 92 IPR002963 GO:0009664
Gso18g0391 281 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Gso18g0391 281 PRINTS Expansin signature 186 198 IPR002963 GO:0009664
Gso18g0391 281 PRINTS Expansin signature 198 219 IPR002963 GO:0009664
Gso18g0391 281 PRINTS Expansin signature 233 254 IPR002963 GO:0009664
Gso18g0391 281 PRINTS Expansin signature 262 278 IPR002963 GO:0009664
Gso18g0391 281 SUPERFAMILY Barwin-like endoglucanases 50 205 IPR036908 -
Gso18g0391 281 SMART dpbb_1 83 177 IPR007112 -
Gso18g0391 281 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Gso18g0391 281 PRINTS Expansin/Lol pI family signature 170 186 IPR007118 GO:0005576
Gso18g0391 281 PRINTS Expansin/Lol pI family signature 224 238 IPR007118 GO:0005576
Gso18g0391 281 PRINTS Expansin/Lol pI family signature 262 276 IPR007118 GO:0005576
Gso18g0391 281 MobiDBLite consensus disorder prediction 25 47 - -
Gso18g0391 281 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 187 IPR007112 -
Gso18g0391 281 Gene3D - 37 183 IPR036908 -
Gso18g0391 281 PANTHER EXPANSIN-A15 33 280 IPR002963 GO:0009664
Gso18g0391 281 Pfam Expansin C-terminal domain 188 265 IPR007117 -
Gso18g0391 281 Gene3D - 187 279 IPR036749 -
Gso18g0391 281 SUPERFAMILY PHL pollen allergen 184 276 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0391 Gso-Chr18 3881773 3884638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0391 50 281 Expansin Gene Family AT3G03220 73.191 9.49e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0391 - - gmx:100790211 568.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0391 18 3881773 3884638 Gso14g1777 14 50062289 50064628 PCT
Gso18g0391 18 3881773 3884638 Gso2g2049 2 45099317 45101576 PCT
Gso14g1777 14 50062289 50064628 Gso18g0391 18 3881773 3884638 PCT
Gso2g2049 2 45099317 45101576 Gso18g0391 18 3881773 3884638 PCT