Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0389 ATGAATATGGCTCCTGTTTCATTGCCTCCTGGGTTTAGGTTCCACCCCACCGACGAGGAACTCGTTTCTTATTACCTCAAAAGAAAGATAAATGGTCGTAAGATTGAGTTAGAGATCATCCATGAAGTTGATCTTTATAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGTTACCGGGTAAAGATTTGGAGTGGTATTTCTTCAGCCCTAGAGATAGGAAGTACCCAAATGGATCAAGGACCAATCGTGCAACCAAATCTGGGTATTGGAAGGCCACAGGGAAGGACCGTAAGGTGAACTCTGAGAGCCGTGCAATAGGGATGAAGAAAACCCTAGTTTACTATAGAGGTAGGGCACCACATGGATGTCGCACAGGTTGGGTTATGCATGAGTATCGTCTTGATGAGACTCAGTGCGAAACTAATTCAGGCTTGCAGGATGCATATGCTCTTTGCCGTGTGTGCAAGAAGACTGCAGTGATTCCCCCAAAGGTTGGAGATCAGCACTATGTTAATGTTCCTAGCCATGTAAATCAGATTACAAGTGATCAATCATCAAGCATTGACATTGAGCTATACTCAGAAGGAAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTGATGCCGTGGGATACATGCCCATCCCCAAACATAAATATTGGGTCTGCTCTCAATATCAATATCAATGGTGGGACAAGGGATAATAACATTGGGACATGGTCACACTTCTTAGCAGAAGACTTACCCAATCTTCCAACATCTGCTTCTTCATTTCCCAATTATGGATCTATGAGTTACCCTCCATCAAAGGTGGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTACCATGCCTCCTTTGGAGGTGCAGGACTTCCCTCAAGTTGGCATTTCCGAGCTGAAGATGGCACAAGCCTCGGGTTCCAATATGTGTGGAGGAAGCAGAAATAATGAAACAGATATCTTGCAGGAAATTCTTTCAGTTGCTCATGCTTCCCATGAGTTAATAAATCAGTCCAACTACTCATCACATTCACAGGCATTGGGTGCCAATGAAAATAACTATGCTGCACCTCATGAAAGTGATTTTACTTTTATGGTTGGCAACAATTACAATCGTGTGAATGATATGAACACCATGGGATTTGTTGACAAAGCATGGGAAGACCCTAACGCAAGATCAATAGAGATCGGGGATCTTGATGATGGATTCAAGACAGAGAGGATGGTGGAGAACTTAAGATGGGTTGGAATGTCCAGCAAAAATATGGAAAAGGGCTTTATGGAGGAGCAAAAGATTGTGCCGATTGAGCATATCTCAAACTTCCAAACTAACAGGGAAGAAAACGAGGTGCAAGTAGGATCTGAGCAACACAATAACAACAAAGAACTCAATGACACTGACATTGACGATTTCTCAATGGGGTTCATCAATGGTGACGACCACAATGAGAACTTCATAGATGAGGGTAACATTAATTATTCAAATTCTACAAACTTTGAGGTTGTTGAGGAAACAAAAGTCAGTCATGGAATGTTTGTCTCCACTCGCCAAGTAGCTGACACATTCTTTCATCAAATAGCTCCTTCACAAACCGTCAAAGTTCAACTCAATCCATTAATGGCTGAAGATCAATCTATAGAGAATGCAGTAATGGTTAACCAAGGGCCCCCTTTCTTTAGAAAGTTCAAGGCCTATGTGATGGGGAAGCTGACAAAGTCATCAAACACAATAGCAAGTGCCCTTGTGTTCCTCTTTGCACTTTTGTTGATGCATTGTGTGTTTTTGAAGGAACAAGTGGAAGATTTGAAATCGGACCCCAAATGCTTTGATGGTGCTAACTCCATGAAGAAAATTATGAGACAACCAGCTGAGAACATCATATGGAATGAACAAGAAAATTTTTGGTCTGTTGGTATTAAATGCGGGAAAGGATTTAGTGTGGTCTTGAAGAAGATAGGCATTTTCCTCACCATATCATTGGCTCTTTGTACCATGTGGGCTAACCATGTTATAGTTGACTCTTAG 2037 0.4183 MNMAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIHEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSESRAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNSGLQDAYALCRVCKKTAVIPPKVGDQHYVNVPSHVNQITSDQSSSIDIELYSEGRGEVLESSNYLMPWDTCPSPNINIGSALNININGGTRDNNIGTWSHFLAEDLPNLPTSASSFPNYGSMSYPPSKVDIALECARMQHRFTMPPLEVQDFPQVGISELKMAQASGSNMCGGSRNNETDILQEILSVAHASHELINQSNYSSHSQALGANENNYAAPHESDFTFMVGNNYNRVNDMNTMGFVDKAWEDPNARSIEIGDLDDGFKTERMVENLRWVGMSSKNMEKGFMEEQKIVPIEHISNFQTNREENEVQVGSEQHNNNKELNDTDIDDFSMGFINGDDHNENFIDEGNINYSNSTNFEVVEETKVSHGMFVSTRQVADTFFHQIAPSQTVKVQLNPLMAEDQSIENAVMVNQGPPFFRKFKAYVMGKLTKSSNTIASALVFLFALLLMHCVFLKEQVEDLKSDPKCFDGANSMKKIMRQPAENIIWNEQENFWSVGIKCGKGFSVVLKKIGIFLTISLALCTMWANHVIVDS* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0389 678 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 3 396 - -
Gso18g0389 678 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Gso18g0389 678 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Gso18g0389 678 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Gso18g0389 678 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 396 - -
Gso18g0389 678 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0389 Gso-Chr18 3839905 3844734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0389 3 669 NAC Transcription Factor Family AT1G65910 44.169 2.12e-164 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso18g0389 NAM 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0389 - - gmx:100818019 1384.01