Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0374 ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCAAGGTTGCTTCCAATATATCTATCCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTTCCAATGTGACAAATCCAATAGAGCTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAAATTCAACAACAATGACTTCTCATTCTCAAGCACAAGTGAGAGCAGCAATGGTCCTCTCTCTCAAACTAATTTAGCAGCCAACCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGCAAGTTTTTCAGCTCACAGGCTCTTGGCGGCCACCAAAATGCACACAAGAGAGAAAGAACAATAGCGAAGAGAGCTATGCGAATGGGGATATTCTCTGAGAGGTATGCAAGTCTAGCATCTCTCCCTTTTCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTGCACCACGGCTTTTCGCCAACAATGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGCTACCATCAGGTTCCCTCTGAGGAAGGCCATACTCATCAGAATTTCACACTCAGTGGAAGTTCAAATTTGAGTTTTGTTGGTTCGAGTCTTCCACCAGTTGACTTAGAGAACTCAACACCTGAGTTGACATTGAAACTTTGA 756 0.4418 MKQHFDLEVVASAEYESEVSSKVASNISIQETYAGPCSDNLTNSSNVTNPIELHLHSDAISLDLTLKFNNNDFSFSSTSESSNGPLSQTNLAANPRVFSCNYCKRKFFSSQALGGHQNAHKRERTIAKRAMRMGIFSERYASLASLPFHGSFRSLGIKAHSSLHHGFSPTMRPPEMKSSARFEQGYVGLPIFLEEDEAELLWQGSYHQVPSEEGHTHQNFTLSGSSNLSFVGSSLPPVDLENSTPELTLKL* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0374 251 ProSitePatterns Zinc finger C2H2 type domain signature. 100 120 IPR013087 -
Gso18g0374 251 PANTHER ZINC FINGER PROTEIN JAGGED 1 251 IPR045320 GO:0003700
Gso18g0374 251 PANTHER ZINC FINGER PROTEIN 3-RELATED 1 251 - -
Gso18g0374 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 98 125 IPR013087 -
Gso18g0374 251 Gene3D Classic Zinc Finger 76 144 - -
Gso18g0374 251 SUPERFAMILY beta-beta-alpha zinc fingers 95 125 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0374 Gso-Chr18 3650007 3653352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0374 96 251 C2H2 Transcription Factor Family AT1G66140 49.724 2.50e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g0374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0374 - - gmx:100815175 468.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0374 18 3650007 3653352 Gso13g1242 13 27534443 27537920 GST
Gso18g0374 18 3650007 3653352 Gso14g1791 14 50222777 50225927 PCT
Gso18g0374 18 3650007 3653352 Gso2g2066 2 45263531 45267206 PCT
Gso14g1791 14 50222777 50225927 Gso18g0374 18 3650007 3653352 PCT
Gso2g2066 2 45263531 45267206 Gso18g0374 18 3650007 3653352 PCT