Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g0374 | ATGAAACAACACTTTGATCTTGAAGTGGTGGCCTCAGCAGAATATGAATCTGAAGTTAGCAGCAAGGTTGCTTCCAATATATCTATCCAAGAAACCTATGCAGGTCCTTGCAGTGACAACCTCACCAACTCTTCCAATGTGACAAATCCAATAGAGCTTCATCTCCATTCAGATGCTATCTCCCTTGACTTAACTCTCAAATTCAACAACAATGACTTCTCATTCTCAAGCACAAGTGAGAGCAGCAATGGTCCTCTCTCTCAAACTAATTTAGCAGCCAACCCGCGAGTCTTCTCTTGCAATTACTGCAAGCGCAAGTTTTTCAGCTCACAGGCTCTTGGCGGCCACCAAAATGCACACAAGAGAGAAAGAACAATAGCGAAGAGAGCTATGCGAATGGGGATATTCTCTGAGAGGTATGCAAGTCTAGCATCTCTCCCTTTTCATGGTTCTTTCAGGTCCTTAGGAATAAAGGCACACTCTTCACTGCACCACGGCTTTTCGCCAACAATGAGGCCTCCTGAGATGAAAAGCAGTGCAAGATTTGAGCAAGGATATGTTGGTCTTCCAATATTCTTGGAGGAGGATGAGGCAGAACTCTTGTGGCAAGGTAGCTACCATCAGGTTCCCTCTGAGGAAGGCCATACTCATCAGAATTTCACACTCAGTGGAAGTTCAAATTTGAGTTTTGTTGGTTCGAGTCTTCCACCAGTTGACTTAGAGAACTCAACACCTGAGTTGACATTGAAACTTTGA | 756 | 0.4418 | MKQHFDLEVVASAEYESEVSSKVASNISIQETYAGPCSDNLTNSSNVTNPIELHLHSDAISLDLTLKFNNNDFSFSSTSESSNGPLSQTNLAANPRVFSCNYCKRKFFSSQALGGHQNAHKRERTIAKRAMRMGIFSERYASLASLPFHGSFRSLGIKAHSSLHHGFSPTMRPPEMKSSARFEQGYVGLPIFLEEDEAELLWQGSYHQVPSEEGHTHQNFTLSGSSNLSFVGSSLPPVDLENSTPELTLKL* | 252 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g0374 | 251 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 100 | 120 | IPR013087 | - | |
Gso18g0374 | 251 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 251 | IPR045320 | GO:0003700 | |
Gso18g0374 | 251 | PANTHER | ZINC FINGER PROTEIN 3-RELATED | 1 | 251 | - | - | |
Gso18g0374 | 251 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 98 | 125 | IPR013087 | - | |
Gso18g0374 | 251 | Gene3D | Classic Zinc Finger | 76 | 144 | - | - | |
Gso18g0374 | 251 | SUPERFAMILY | beta-beta-alpha zinc fingers | 95 | 125 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g0374 | Gso-Chr18 | 3650007 | 3653352 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g0374 | 96 | 251 | C2H2 Transcription Factor Family | AT1G66140 | 49.724 | 2.50e-46 | 153 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso18g0374 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g0374 | - | - | gmx:100815175 | 468.774 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g0374 | 18 | 3650007 | 3653352 | Gso13g1242 | 13 | 27534443 | 27537920 | GST | |
Gso18g0374 | 18 | 3650007 | 3653352 | Gso14g1791 | 14 | 50222777 | 50225927 | PCT | |
Gso18g0374 | 18 | 3650007 | 3653352 | Gso2g2066 | 2 | 45263531 | 45267206 | PCT | |
Gso14g1791 | 14 | 50222777 | 50225927 | Gso18g0374 | 18 | 3650007 | 3653352 | PCT | |
Gso2g2066 | 2 | 45263531 | 45267206 | Gso18g0374 | 18 | 3650007 | 3653352 | PCT |