Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0373 ATGTGCCACCCCCATTGCTCACAGTCTCACTGCTCCACTTCACTTCCCAAACACCCTCCCCCACCCCATTTCCACCACCACCCTTCTCCCTCCATCTTCTTCACCATGAAGAACCACAAGTCCCACATCGCTACTTACCTATCTTGTTTCCTCTCCATAATCCTCTACGCACACTCCCAAGATGACGCTTCAGCGATGCTCTCTCTCAGAGACAGTCTCAACCCGCCCGAATCTCTCGGGTGGTCCGACCCGGACCCGTGTAAGTGGAAACACGTCGCGTGCTCCGAAGAGGTCAAACGGATCATTCGTATCCAAATCGGGCACTTGGGTCTCCAGGGAACACTTCCCAACGCCACCGTGATCCAAACCCTGACCCAATTGGAACGCTTGGAGCTCCAATTCAACAACATTTCGGGTCCCCTCCCGAGCCTAAACGGGTTGGGCTCCCTCCAAGTCCTCATTCTCAGCAACAACCAATTCTCTTCCATCCCCGACGACTTCTTCGCCGGCATGTCGGAGCTTCAGAGCGTCGAGATCGACGACAACCCCTTCAAACCTTGGAAGATCCCCGACAGCATTGTTAACTGCTCTTCCCTCCAAAATTTTTCTGCGAATTCCGCCAACATTGTCGGCACACTCCCGGATTTCTTCTCGAGTCTTCCCACGTTGACCCACTTGCACTTGGCCTTCAATAACCTCCAGGGTGCATTGCCTTTGAGCTTTTCCGGGTCTCAGATTGAGACTCTCTGGTTGAACGGGCAAAAGGGTGTTGAAAGCAACAACCTTGGCGGCAATGTTGATGTTTTGCAGAACATGACGTCGTTGACGCAGGTTTGGTTGCATTCCAACGCTTTTACTGGGCCTCTTCCTGATTTTTCCGGTTTGGTAAGCTTGCAAGATTTGAACTTGAGGGATAACGCCTTCACGGGTCCTGTTCCTGGGTCTTTGGTGGGGTTGAAATCGCTTAAAGCTGTGAACTTGACTAATAACTTGTTTCAGGGGGCAGTGCCTGAGTTTGGTTCTGGGGTTGAGGTGGACTTGGATTTGGGTGATGATTCTAACAGTTTCTGTTTGTCACGTGGAGGGAAGTGCGATCCAAGGGTGGAGATTCTGCTTTCTGTTGTGAGGGTTTTAGGGTATCCTAGGAGGTTTGCAGAGAATTGGAAGGGGAATAGTCCTTGTGCTGATTGGATTGGGGTTACTTGTAGTGGTGGTGGGGACATTACTGTTGTTAATTTTCAGAAGATGGGTCTTGAGGGTACTATAGCTCCTGAGTTTGGTTTGCTTAAATCACTGCAAAGGCTTGTGCTTGCTGATAATAATCTCACTGGGTCAATTCCAGAAGAGCTAGCTTCCTTACCTGGACTTGTTGAATTGAATGTTGCAAACAATCGGCTTTATGGGAAGATCCCGAGTTTTAAGAGCAATGTGGCTCTTACCACAAATGGGAATAAGGACATAGGGAAGGATAAGCCCAACCCGGGGCCTAGATCATCACCTTTAGGTCCACTAAATTCAAGAGCTCCAAACAGAAGTGAAGAAAATGGTGGGAAAAGATCTTCACATGTAGGGGTGATTGTGCTTGCTGTGATAGGTGGTGTGGTGTTGGTTTTGGTGATTAGTTTCTTGGTGTGTTGTCTGTTTAGGATGAAGCAGAAACGGTTGAGCAAGGTGCAGAGTCCAAATGCATTGGTTATTCACCCGCGGCATTCTGGATCGGATAATGAAAATGTGAAGATAACGGTTGCAGGTTCAAGTCTCAGTGTTTGTGATGTTAGTGGAATTGGAATGCAAACCATGGCTGGCAGTGAGGCAGGGGATATTCAAATGGGTGAAGCAGGGAACATGGTTATTTCTATTCAAGTTCTGAGGAATGTCACTGACAACTTCAGTGAGAAGAATATACTGGGACAAGGAGGTTTTGGAACTGTTTACAAAGGTGAACTGCATGATGGCACGAAGATTGCAGTGAAAAGGATGGAATCTGGGGCAATAAGTGGGAAAGGTGCAACAGAATTTAAGTCTGAAATTGCTGTTTTGACGAAAGTTCGCCACCGGCATCTTGTTTCCCTTCTTGGTTACTGCTTGGATGGGAATGAGAAGCTTCTTGTGTATGAGTACATGCCTCAGGGGACATTAAGTAAGCACCTTTTTAACTGGATGGAAGAAGGACTGAAGCCACTGGAATGGAACAGAAGATTGACCATTGCCTTAGATGTGGCAAGGGCTGTTGAGTATCTTCATAGCTTGGCCCATCAAAGCTTTATTCATAGAGACTTAAAGCCTTCAAACATTCTCCTTGGAGATGATATGAGAGCAAAGGTTTCAGATTTTGGTCTTGTGCGTCTTGCTCCAGAAGGAAAAGCTTCCGTAGAAACAAGGATTGCTGGAACTTTTGGATATTTGGCACCAGAATATGCAGTTACTGGTCGTGTGACTACTAAAGTTGATGTGTTCAGCTTTGGGGTAATATTGATGGAGCTGATAACTGGAAGAAGAGCACTTGATGATACCCAACCAGAGGATAGCATGCACCTTGTAACATGGTTCCGTAGAATGTATGTAAATAAAGACTCATTCCAGAAAGCCATTGACCACACAATTGATCTCAATGAGGAAACGCTTCCCCGTATTCACACTGTAGCTGAATTAGCTGGCCACTGTTGTGCAAGGGAGCCATATCAAAGGCCTGACGCGGGTCATGCTGTTAATGTGCTTTCTTCTCTTGTAGAACTTTGGAAACCATCTGATCAAAGTTCTGAAGATGTATATGGCATTGACCTAGACATGTCTTTACCACAAGCATTGAAGAAGTGGCAGGCTTATGAAGGTAGAAGCCAAATGGAATCTTCTTCTTCATCACTCCTACCTCCTAGCTTGGATAACACTCATACAAGCATACCTACGCGTCCGAATGGATTTGTGGAGTCTTTCACATCAGCAGATGGTAGGTGA 2955 0.467 MCHPHCSQSHCSTSLPKHPPPPHFHHHPSPSIFFTMKNHKSHIATYLSCFLSIILYAHSQDDASAMLSLRDSLNPPESLGWSDPDPCKWKHVACSEEVKRIIRIQIGHLGLQGTLPNATVIQTLTQLERLELQFNNISGPLPSLNGLGSLQVLILSNNQFSSIPDDFFAGMSELQSVEIDDNPFKPWKIPDSIVNCSSLQNFSANSANIVGTLPDFFSSLPTLTHLHLAFNNLQGALPLSFSGSQIETLWLNGQKGVESNNLGGNVDVLQNMTSLTQVWLHSNAFTGPLPDFSGLVSLQDLNLRDNAFTGPVPGSLVGLKSLKAVNLTNNLFQGAVPEFGSGVEVDLDLGDDSNSFCLSRGGKCDPRVEILLSVVRVLGYPRRFAENWKGNSPCADWIGVTCSGGGDITVVNFQKMGLEGTIAPEFGLLKSLQRLVLADNNLTGSIPEELASLPGLVELNVANNRLYGKIPSFKSNVALTTNGNKDIGKDKPNPGPRSSPLGPLNSRAPNRSEENGGKRSSHVGVIVLAVIGGVVLVLVISFLVCCLFRMKQKRLSKVQSPNALVIHPRHSGSDNENVKITVAGSSLSVCDVSGIGMQTMAGSEAGDIQMGEAGNMVISIQVLRNVTDNFSEKNILGQGGFGTVYKGELHDGTKIAVKRMESGAISGKGATEFKSEIAVLTKVRHRHLVSLLGYCLDGNEKLLVYEYMPQGTLSKHLFNWMEEGLKPLEWNRRLTIALDVARAVEYLHSLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASVETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRRALDDTQPEDSMHLVTWFRRMYVNKDSFQKAIDHTIDLNEETLPRIHTVAELAGHCCAREPYQRPDAGHAVNVLSSLVELWKPSDQSSEDVYGIDLDMSLPQALKKWQAYEGRSQMESSSSSLLPPSLDNTHTSIPTRPNGFVESFTSADGR* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0373 984 ProSiteProfiles Protein kinase domain profile. 630 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0373 984 Pfam Leucine rich repeat 126 183 IPR001611 GO:0005515
Gso18g0373 984 SMART serkin_6 630 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0373 984 Gene3D Ribonuclease Inhibitor 366 491 IPR032675 -
Gso18g0373 984 MobiDBLite consensus disorder prediction 947 984 - -
Gso18g0373 984 SUPERFAMILY L domain-like 67 480 - -
Gso18g0373 984 ProSitePatterns Protein kinases ATP-binding region signature. 636 658 IPR017441 GO:0005524
Gso18g0373 984 Gene3D Transferase(Phosphotransferase) domain 1 708 928 - -
Gso18g0373 984 Gene3D Phosphorylase Kinase; domain 1 592 707 - -
Gso18g0373 984 PANTHER OSJNBA0070M12.3 PROTEIN 44 984 - -
Gso18g0373 984 SUPERFAMILY Protein kinase-like (PK-like) 618 921 IPR011009 -
Gso18g0373 984 PANTHER RECEPTOR PROTEIN KINASE TMK1 44 984 - -
Gso18g0373 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 755 767 IPR008271 GO:0004672|GO:0006468
Gso18g0373 984 Gene3D Ribonuclease Inhibitor 58 364 IPR032675 -
Gso18g0373 984 MobiDBLite consensus disorder prediction 1 23 - -
Gso18g0373 984 SMART LRR_typ_2 295 318 IPR003591 -
Gso18g0373 984 SMART LRR_typ_2 124 146 IPR003591 -
Gso18g0373 984 SMART LRR_typ_2 429 453 IPR003591 -
Gso18g0373 984 SMART LRR_typ_2 220 243 IPR003591 -
Gso18g0373 984 SMART LRR_typ_2 147 170 IPR003591 -
Gso18g0373 984 SMART LRR_typ_2 319 342 IPR003591 -
Gso18g0373 984 Pfam Leucine rich repeat N-terminal domain 369 403 IPR013210 -
Gso18g0373 984 Pfam Leucine rich repeat N-terminal domain 60 95 IPR013210 -
Gso18g0373 984 ProSiteProfiles Leucine-rich repeat profile. 149 170 IPR001611 GO:0005515
Gso18g0373 984 Pfam Protein kinase domain 631 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0373 984 MobiDBLite consensus disorder prediction 481 518 - -
Gso18g0373 984 CDD STKc_IRAK 636 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0373 Gso-Chr18 3624036 3627944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0373 125 912 Receptor kinase-like Gene Family AT5G07280 32.073 9.15e-85 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gso18g0373 Pkinase 3.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0373 - K00924 gmx:100813768 1900.95