Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0372 ATGGTTTTGTCTTGGTCAAGAAGGAACGTTTTCCGCCGTGCCAAGAAGGAGAAGTCACAAACTCAATTGGAAGTGGAGGTTGTGATTCCCAACCACTTTCACTGCCCGGTGAGTCTGGAGCTGATGACAGACCCAGTGACTTTATCAACCGGCATCACCTACGACCGTGTGAGCATTGAGAAGTGGATCGAGGGAGGGAACAGAACCTGCCCCGTCACCAACCAGGTGCTGACAACCTTCGACATCATCCCCAACCACGCCATTCGCAGGATGATTCAGGATTGGTGTGTCGAAAATAGTTCTTATGGGATTGATAGAATCCCCACACCTCGTATTCCTATCTCGGCATACGAGGTTTCCGACACGTGTACCAGGATCTTGTCGGCTTGCCAGCGTGGAGATGACAAGAGGTGTCAGGAGTTGGTCGGGAAGATTAAGGTTTGGAGTAGAGAGAGTGAAAGGAACAAGAGGTGCATAGTTGGTGCTGGTGCTGGTGCTGTTCTTGCATATGCCTTTGATTGTTTCTCAAGTAACTCTATTGAAAAACATGTGGTGCTTTTGGAGGAGGTTTTGGAGGTGATGACATGGATGGTCCCACTTGGGGAAGAGGGTGTTTCTAAATTGAGTTCAGGAGCTTCTTTGAATTCGTTGGTATGGTTTCTAGAGGGGAAAGACCTTGCATCAAGGCAAAGTGCTGCTTTGTTGCTTAAAGAAGTGTGTGTTCAAGAATTGGCCAAGGTTGGAGAAGTTGTTGAAGCTTTGGTTAAGATGGTTAGGGAGCCTATTGGGAGCACTTCCACCAAGGCTTGTTTGGCAACAATTTTTAACTTGGTGTCGTTGGCTGCGAATAGAGAGGGAATTGCTCAAAGATTTGTGGAGTTGGGTTTGGTTTCACTTTTGCTAGAGGCTATTGTTGATGGAGAGAAAGGGGTGTGTGAGAAGGCACTTGGGGTGTTGGATTGCATTTGTGATTGCGAAAAGGGGAAGGAGGTTGTGAAGAGCAATGCTCTAGCCTTGCCTCTTGTTGTTAGGAAGCTTTTGAGGGTGTCACCATTGGCTTCAGGTTTTGCTGTGTCTATTCTTAGGAAGATTTGTGACAAGAGGGAGGAAGGGATTCTGATTGAGGCACTTCAAGTTGGGCTTTTTCAGAAGCTCTTGGTTCTGCTGCAGGTTGGCTGTGATGAGAGCACCAAGGAGAATGCTACCGGGTTGTTGAAACTGTTGAATGGTTACAGGAACAAAGCGGAGTGCACTGACTCATCATTGAATTTCGAGCATCTTAAGAAGCCATTTTAA 1296 0.4699 MVLSWSRRNVFRRAKKEKSQTQLEVEVVIPNHFHCPVSLELMTDPVTLSTGITYDRVSIEKWIEGGNRTCPVTNQVLTTFDIIPNHAIRRMIQDWCVENSSYGIDRIPTPRIPISAYEVSDTCTRILSACQRGDDKRCQELVGKIKVWSRESERNKRCIVGAGAGAVLAYAFDCFSSNSIEKHVVLLEEVLEVMTWMVPLGEEGVSKLSSGASLNSLVWFLEGKDLASRQSAALLLKEVCVQELAKVGEVVEALVKMVREPIGSTSTKACLATIFNLVSLAANREGIAQRFVELGLVSLLLEAIVDGEKGVCEKALGVLDCICDCEKGKEVVKSNALALPLVVRKLLRVSPLASGFAVSILRKICDKREEGILIEALQVGLFQKLLVLLQVGCDESTKENATGLLKLLNGYRNKAECTDSSLNFEHLKKPF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0372 431 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Gso18g0372 431 Gene3D - 115 419 IPR011989 -
Gso18g0372 431 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 21 17 431 - -
Gso18g0372 431 SUPERFAMILY RING/U-box 20 105 - -
Gso18g0372 431 CDD RING-Ubox_PUB 33 75 IPR045210 -
Gso18g0372 431 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Gso18g0372 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 105 IPR013083 -
Gso18g0372 431 Pfam U-box domain 29 100 IPR003613 GO:0004842|GO:0016567
Gso18g0372 431 PANTHER WDSAM1 PROTEIN 17 431 IPR045185 GO:0061630
Gso18g0372 431 SUPERFAMILY ARM repeat 124 408 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0372 Gso-Chr18 3619921 3621549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0372 20 431 U-box Gene Family AT5G37490 46.778 9.90e-125 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0372 - - gmx:548086 830.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0372 18 3619921 3621549 Gso13g1243 13 27576514 27578234 GST
Gso18g0372 18 3619921 3621549 Gso14g1793 14 50262357 50263968 PCT
Gso18g0372 18 3619921 3621549 Gso2g2069 2 45294522 45296197 PCT
Gso14g1793 14 50262357 50263968 Gso18g0372 18 3619921 3621549 PCT
Gso2g2069 2 45294522 45296197 Gso18g0372 18 3619921 3621549 PCT