Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0371 ATGACTAGAAAGAAGGTAAAGTTGGCATTCATAGCCAACGACTCAGCTAGGAAGGCAACATTCAAGAAGAGGAAGAAGGGTCTAATGAAGAAGGTTAGTGAACTTAGCACCCTTTGTGGGATTGATGCATGTGCAATTGTTTACAGTCCCTATGATCCTCAACCCGAGGTTTGGCCATCCCCGATGGGGGTTCAAAGGGTGCTTGCTAAGTTCAGGAGAATGCCTGAATTGGAGCAAAGCAAGAAGATGGTGAACCAAGAGAGTTTTCTGAGGCAGAGAATCATGAAGGCCAAAGACCAGTTGAAGAAACAAAGGAAGGATAATAGGGAAAAGGAGATGACTCGGCTCATGTTTCAGTACCTTAGTGCAGGTAAGATTATGCACAATATAAGCATGGTTGATTTGAATGATTTGGCATGGTTGATTGACCAGAACTTGAAGGACATCAACAGAAGGATTGAGGTGTTGACTAAGAATGCTCAAAGTCAACCGCAAATTGCAGCACCAGCGGTGACTGATGTTGTTGCCAAGGTTGAAGACAAGGGACAAGGGAGTCAGCATGGCCATCAGGGGTTTGATATCAACATGGATCTCATGCAGAAGCAGAATTGGTTCATGAATTTGATGAATAATGGTGGTGGTGGTGGGAATGAGGCTATGCCTATTGTCGGAGATGTTAATCAACAAAATGGCTTTTGGCCTAATCCTTTTTTCCATTGA 720 0.4375 MTRKKVKLAFIANDSARKATFKKRKKGLMKKVSELSTLCGIDACAIVYSPYDPQPEVWPSPMGVQRVLAKFRRMPELEQSKKMVNQESFLRQRIMKAKDQLKKQRKDNREKEMTRLMFQYLSAGKIMHNISMVDLNDLAWLIDQNLKDINRRIEVLTKNAQSQPQIAAPAVTDVVAKVEDKGQGSQHGHQGFDINMDLMQKQNWFMNLMNNGGGGGNEAMPIVGDVNQQNGFWPNPFFH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0371 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso18g0371 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso18g0371 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 200 - -
Gso18g0371 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso18g0371 239 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Gso18g0371 239 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Gso18g0371 239 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Gso18g0371 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Gso18g0371 239 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso18g0371 239 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 200 - -
Gso18g0371 239 Coils Coil 87 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0371 Gso-Chr18 3617288 3618709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0371 1 156 Type I MADS-box Gene Family AT5G48670 68.590 5.30e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso18g0371 SRF-TF 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0371 - - gmx:100813231 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0371 18 3617288 3618709 Gso13g1244 13 27580228 27581287 GST