Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0359 ATGGGAAGGCAACCTTGCTGTGACAAAGTGGGGTTGAAGAAGGGGCCATGGACTGCAGAGGAGGATAAGAAACTCATCAATTTCATCCTCACTAATGGTCAATGTTGCTGGAGAGCTCTCCCTAAACTAGCAGGGCTGCTAAGGTGTGGAAAAAGTTGCAGGCTCAGGTGGACAAATTACCTGAGGCCAGACCTGAAGAGAGGCCTTCTATCAGAATATGAAGAGAAAATGGTCATTGATCTTCATGCTCAACTTGGCAATAGATGGTCTAAGATTGCTTCTCATCTCCCAGGAAGAACCGATAATGAGATCAAGAATCACTGGAATACCCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTGTTACTCACAAGCCACTTTCCAATAAAACTGAGGAAACTCAAGCCCAACCAGATGAACAAACCCATCAACCATTGCAAGAACAACAACAACAACAACAACAACATCAACATCAACAACAACCTATCCCAGTTGAGAAAGACCTCAAATTTGAACCTGAAAAGGAGCAAAACAGGGAGCCAGAGACTTCAGTTGAATCATCAACCATCACTGAAGAAGTTAAGGAGGAAGACCAAATCATGACACCCCTATTTGACTCATGGGAACTAATGAATGAGTTCTGCACTGATGAAGCTCCCATAATAGAACCAAATGAGATTCTAGTTCCTTCTGCTCCTTCTTCCACTTCACCAACCACTACTACTATATCATCTTCAACATCAACATCCTCTTATTCAAATTCATCCAACTTCCTTGAAGACCTGCTGCTCCCAGATTTGGAGTGGTCTGATGATTACAATGATACTAATTTTGACAACAATAGCAGCATGGCCTTGTGGGATGATGACTTTATTGGAAGTTGGAATTCGCTTATTAATGGTGATGGTGATAGAAAGCAAGTGTTTGACGCTCCTATCAATCAGTACCCAAGAGTGATCATGGATTCAGATTCTTGGGACTATGGCTTGTTTTGA 1002 0.4192 MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRALPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKPLSNKTEETQAQPDEQTHQPLQEQQQQQQQHQHQQQPIPVEKDLKFEPEKEQNREPETSVESSTITEEVKEEDQIMTPLFDSWELMNEFCTDEAPIIEPNEILVPSAPSSTSPTTTTISSSTSTSSYSNSSNFLEDLLLPDLEWSDDYNDTNFDNNSSMALWDDDFIGSWNSLINGDGDRKQVFDAPINQYPRVIMDSDSWDYGLF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0359 333 MobiDBLite consensus disorder prediction 117 200 - -
Gso18g0359 333 Gene3D - 71 116 - -
Gso18g0359 333 MobiDBLite consensus disorder prediction 165 184 - -
Gso18g0359 333 CDD SANT 16 61 IPR001005 -
Gso18g0359 333 MobiDBLite consensus disorder prediction 231 252 - -
Gso18g0359 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gso18g0359 333 SMART sant 66 114 IPR001005 -
Gso18g0359 333 SMART sant 13 63 IPR001005 -
Gso18g0359 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso18g0359 333 Gene3D - 11 67 - -
Gso18g0359 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso18g0359 333 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Gso18g0359 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso18g0359 333 CDD SANT 74 112 IPR001005 -
Gso18g0359 333 PANTHER MYB TRANSCRIPTION FACTOR 1 308 - -
Gso18g0359 333 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 308 - -
Gso18g0359 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gso18g0359 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gso18g0359 333 MobiDBLite consensus disorder prediction 130 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0359 Gso-Chr18 3448160 3450656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0359 1 333 MYB Transcription Factor Family AT5G16600 48.913 2.02e-100 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g0359 Myb_DNA-binding 9.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0359 K09422 - gmx:100794413 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0359 18 3448160 3450656 Gso13g1254 13 27772583 27775097 GST
Gso14g1809 14 50461281 50463641 Gso18g0359 18 3448160 3450656 PCT