Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0356 ATGGCTTCTTCCTTGGATATGTCGCTTGATGATAGAATAAAGAACAGAAGTAACAGAGGGAGAGGTAGAGGAGGACGTGGTAGAGCCCATTCTGGCCGTGGACCAAGTGGCGCTCTTAATGGTGGAAGAATGGCTGGTGCTGTTAGTAGTAGAAGAATGGCTGGTGCTAGTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTAACACTCGGCCGTCATCGTATGCTATTGCCAAGTCTATTCGCAGAGCTAGGCCCTTTCCATGGCAGCATGATTTGTTTGAAGATAGCTTAAGAGCTGCTGGGATTCAAGGAGTAGAAGTTGGCACCAAGTTGTATGTTTCCAATTTGGACCATGGAGTGACCAATGAAGACATAAGGGAACTTTTCTCTGAGCTTGGAGAGTTGAAGCGTTTTGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTCGTTTATACTAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTTCCAATTCAGAATTGCCTATAAGTGCTCGGGTGAATGTCACTGGGGTGAATGGGCGCAGGAAGAGGACTGTTGTAATGACGCCTAGAGGTGGCCAAGCTGGAGGTGGTCCTACTATGCCTAATCGTGGTGCTGGTCGGGGACGTCGAGGTGGCCCAAGGAGTGGCAGTGGACGTGGTGGAGGTGGTGGTCGAGGCCGTGGTCGCGGCAGCAGGGGTGGTGGTGGAGGTAGAGGTCGTGGAAGAAAGGATGCTGTTGAGAAGTCAGCGGAGGAACTTGACAAGGAGCTGGAGACCTATCATGCTGAAGCCATGAACATCTCTTGA 897 0.4872 MASSLDMSLDDRIKNRSNRGRGRGGRGRAHSGRGPSGALNGGRMAGAVSSRRMAGASNGGRTTGAVRRGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGSNSELPISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGPRSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0356 298 MobiDBLite consensus disorder prediction 216 298 - -
Gso18g0356 298 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 297 - -
Gso18g0356 298 MobiDBLite consensus disorder prediction 267 291 - -
Gso18g0356 298 PANTHER THO COMPLEX SUBUNIT 4C 1 297 - -
Gso18g0356 298 SUPERFAMILY RNA-binding domain, RBD 109 189 IPR035979 GO:0003676
Gso18g0356 298 MobiDBLite consensus disorder prediction 1 68 - -
Gso18g0356 298 CDD RRM_THOC4 115 189 - -
Gso18g0356 298 Coils Coil 273 293 - -
Gso18g0356 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 185 IPR000504 GO:0003723
Gso18g0356 298 SMART rrm1_1 116 188 IPR000504 GO:0003723
Gso18g0356 298 Pfam C-terminal duplication domain of Friend of PRMT1 233 292 IPR025715 -
Gso18g0356 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Gso18g0356 298 SMART FoP_duplication_2 226 298 IPR025715 -
Gso18g0356 298 Gene3D - 110 192 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0356 Gso-Chr18 3401682 3406919 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0356 114 195 Eukaryotic Initiation Factors Gene Family AT2G23350 36.585 2.80e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0356 K12881 - gmx:100801491 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0356 18 3401682 3406919 Gso18g0356 18 3401682 3406919 ECH
Gso18g0356 18 3401682 3406919 Gso13g1257 13 27815233 27820461 GST