Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0355 ATGGCAACTGGGGTATTCATTAATAAACCCCCTTCACTTCCTCCGTACCCCGAGATGATTTTGGAGGCAATTGAAGCACTGAATGAAGACAATGGTTCTAATAAATCATCAATTTCGAAGTACATAGAATCTACCTACGGTGGATTACCTCAGGGCCACAAGGTTTTGCTCAATGTGCACCTCGCGAAAATGAGGGACAGTGGAGTGTTAGTGTTTTGGAAGAACAACTACACCAAGCGTGACCCAAAGGCGCCGCCAAGGCGTGGCCGTGGCAGGCCACCCAAGCCCAAGGAGCCTCTGCCACCGGGCACTGTCTTGTCACCGCCCAGGCCCAAGGGCCGTCCTCCGAAGGACCCGAATGACCCAGGGAAGCCACCTAAGGCCTTGACAGAAAGTGGCAGGCCCAGAGGCCGGCCCAGGAAGATGACCCGGCCCACTGGTGGACTAGGCGAAGCATTGCCAGCCTCCAAGGTGAAGGCTGCCACCAGTGGGAGGCCTAGAGGTAGACCTCCCAAAGTGAAGCCCGTGTTTACTGAAATAAGTGCTTAA 549 0.5464 MATGVFINKPPSLPPYPEMILEAIEALNEDNGSNKSSISKYIESTYGGLPQGHKVLLNVHLAKMRDSGVLVFWKNNYTKRDPKAPPRRGRGRPPKPKEPLPPGTVLSPPRPKGRPPKDPNDPGKPPKALTESGRPRGRPRKMTRPTGGLGEALPASKVKAATSGRPRGRPPKVKPVFTEISA* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0355 182 SMART h15plus2 10 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso18g0355 182 MobiDBLite consensus disorder prediction 78 182 - -
Gso18g0355 182 PRINTS Histone H5 signature 26 43 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso18g0355 182 PRINTS Histone H5 signature 104 118 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso18g0355 182 PRINTS Histone H5 signature 134 151 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso18g0355 182 PRINTS Histone H5 signature 156 175 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Gso18g0355 182 MobiDBLite consensus disorder prediction 96 113 - -
Gso18g0355 182 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso18g0355 182 MobiDBLite consensus disorder prediction 80 95 - -
Gso18g0355 182 CDD H15 10 71 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso18g0355 182 Pfam linker histone H1 and H5 family 14 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Gso18g0355 182 SMART AT_hook_2 109 121 IPR017956 GO:0003677
Gso18g0355 182 SMART AT_hook_2 164 176 IPR017956 GO:0003677
Gso18g0355 182 SMART AT_hook_2 87 99 IPR017956 GO:0003677
Gso18g0355 182 SMART AT_hook_2 133 145 IPR017956 GO:0003677
Gso18g0355 182 Gene3D - 8 89 IPR036388 -
Gso18g0355 182 PRINTS AT-hook-like domain signature 87 97 IPR017956 GO:0003677
Gso18g0355 182 PRINTS AT-hook-like domain signature 107 118 IPR017956 GO:0003677
Gso18g0355 182 PRINTS AT-hook-like domain signature 131 141 IPR017956 GO:0003677
Gso18g0355 182 PANTHER HISTONE H1 6 179 - -
Gso18g0355 182 SUPERFAMILY "Winged helix" DNA-binding domain 9 94 IPR036390 -
Gso18g0355 182 PANTHER HMG-Y-RELATED PROTEIN A 6 179 IPR031059 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0355 Gso-Chr18 3397681 3399002 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0355 - - gmx:100803968 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0355 18 3397681 3399002 Gso13g1258 13 27833555 27834891 GST
Gso18g0355 18 3397681 3399002 Gso14g1813 14 50501871 50503281 PCT
Gso18g0355 18 3397681 3399002 Gso2g2089 2 45497008 45498543 PCT