Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0347 ATGGGTTTGTCCCAAGGCCCCTGCACTGATTCCAGGGACCTTTCCAATGCCCCAACCTTAGTTGTAGATCACTACTGTGACTACAACAAGCTCAAATTCCGAACCTTTCTCAGAAAAATGTTCTGGGAATTCGGTCTTGCTTGTGTGGCCAACCCTTCCCGGCGTCGGAGAAGCTCCGAGAGAAGCTCTGCCTATGGAAAAAAGACGAATTTGGAGCACAACAAGGCGTGGCTGCTTGCGGAGTCTGGTGGGTGTGGAGCAGAATTGACCAATGCTGACCCTCAATCGGTTCACTCCTCTTTCAGGTTCAGCTTCTGTTCTCAGGTGGAGTTGGAGTCCTTGAACATGAGTTCTTCAAGTGCTGCAACGGTTTTGATGGTGAATTTGGACAATGGGATGAGTGAATCTCGCGCCAGGGAGATGAAGTGGAGGAGAATGGAGTCGTTGGAGAAGAGCATATCCCCTGTGGCTCACAGCTTGATCAGGTTTAGCTATGGTGAAATTATGTCTGCTACTAGGAATTTCTCCAAAGGGAGGGTGTTGGGGAGAGGGGCATTGAGCTGTGTTTTTAGGGGGAGAGTTGGGATTTTGAGGACTGCAGTGGCGATCAAACGATTGGACAAGGAAAACAAGGAATCTGCCAAGGCCTTTTGTAGAGAATTGATGATTGCAAGTTCTCTTCATAGTTCAAATGTTGTTCCCCTTTTGGGGTTTTGTATTGATCCTGAGGAGGGTTTGTTTTTGGTGTACAAGTATGTTTCAGGGGGCAGTCTGGAGCGCCACTTGCATGGAAGGAAGAAGGGTAGTTCACCTCTTCTGTGGCCTGTGAGGTACAAAGTTGCGATTGGGATTGCTGAAGCTGTAGCTTATCTGCATAGTGGAACTGAAAGATGTGTTGTGCACAGAGACATTAAGCCCTCAAACATTCTGCTTTCTTCAAGGAAGATTCCCAAGCTATGTGACTTCGGATTAGCTACATGGACTTCTGCACCTTCACTTCCTTTCCTTTGCAAAACTGTCAAAGGAACATTTGGATATTTGGCTCCTGAGTATTTCCAACATGGGAAAGTATCAGACAAGACTGATGTATATGCTTTTGGAGTGGTTTTGTTGGAACTCATTACTGGCCGTAAGCCAATTGAGGCAAGGAGATCTTCAGGAGAAGAGAACTTGGTCTTATGGGCTAAACCTTTTCTACAGAAGGGGAAAGGAGCAATTGAAGAGTTGCTTGATCCTCAACTCAAGTGCAGTCTTAAATTCTCAAATCAAATGGGTAGAATGATCGAAGCAGCAGCTGCATGTGTCACAAATGAAGAATCTCGGCGACCTGGCATACATGAGATTATTGCAATACTGAAAGGTGAAGAAGAACCTCTTCTCTCCAAAAGAAAGAAGTCCAGTTTTCTTGGGAATGGATGCGTGATTGATTGTTATTCTCAGTTACAACAAACAAATAATGAGATGAAAAGTCACTTGGCATTAGCAATGTTAGGAGTTGCAGAGTTTGAGGATGATGAATATCTTTATGGTCGATAA 1536 0.4499 MGLSQGPCTDSRDLSNAPTLVVDHYCDYNKLKFRTFLRKMFWEFGLACVANPSRRRRSSERSSAYGKKTNLEHNKAWLLAESGGCGAELTNADPQSVHSSFRFSFCSQVELESLNMSSSSAATVLMVNLDNGMSESRAREMKWRRMESLEKSISPVAHSLIRFSYGEIMSATRNFSKGRVLGRGALSCVFRGRVGILRTAVAIKRLDKENKESAKAFCRELMIASSLHSSNVVPLLGFCIDPEEGLFLVYKYVSGGSLERHLHGRKKGSSPLLWPVRYKVAIGIAEAVAYLHSGTERCVVHRDIKPSNILLSSRKIPKLCDFGLATWTSAPSLPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGVVLLELITGRKPIEARRSSGEENLVLWAKPFLQKGKGAIEELLDPQLKCSLKFSNQMGRMIEAAAACVTNEESRRPGIHEIIAILKGEEEPLLSKRKKSSFLGNGCVIDCYSQLQQTNNEMKSHLALAMLGVAEFEDDEYLYGR* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0347 511 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1 1 509 - -
Gso18g0347 511 Pfam Protein kinase domain 176 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0347 511 SMART serkin_6 175 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0347 511 ProSiteProfiles Protein kinase domain profile. 175 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0347 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Gso18g0347 511 Gene3D Transferase(Phosphotransferase) domain 1 253 467 - -
Gso18g0347 511 SUPERFAMILY Protein kinase-like (PK-like) 158 458 IPR011009 -
Gso18g0347 511 Gene3D Phosphorylase Kinase; domain 1 134 252 - -
Gso18g0347 511 PANTHER OS01G0750732 PROTEIN 1 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0347 Gso-Chr18 3283586 3286862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0347 161 489 Trihelix Transcription Factor Family AT1G70460 39.879 1.29e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso18g0347 Pkinase 5.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0347 - - gmx:100786826 1014.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0347 18 3283586 3286862 Gso13g1268 13 27958252 27961370 GST
Gso18g0347 18 3283586 3286862 Gso14g1822 14 50563258 50566439 PCT
Gso18g0347 18 3283586 3286862 Gso2g2098 2 45582569 45585647 PCT
Gso14g1822 14 50563258 50566439 Gso18g0347 18 3283586 3286862 PCT
Gso2g2098 2 45582569 45585647 Gso18g0347 18 3283586 3286862 PCT