Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0336 ATGGGTTGCTTCTTTAGTGTACCTTCAAAGATCAAAGCTGAGAGCCCTCCACGTAATGGTTTGAATTCAAAGGATGGTAGCAAAGAAGAGAATGATTTGAGTTGTTTAAGCAGCAAGGTGTCCTCTTCAGCTATGCTTCTAACTCCTCAAAGTGAGGATGAGATATTGCAGGCCAGCAATTTGAAGAACTTCACATTCAATGAGCTAAGAACTGCTACAAGGAACTTTCGTCCGGATAGTATGGTGGGCGAAGGTGGGTTTGGTTGTGTGTTTAAGGGGTGGATCGATGAGCATACACTTGCCCCTACTAAACCAGGGACAGGAATGGTCATTGCTGTGAAGAGGCTTAACCAAGAAAGCAACCAGGGGCACATTGAATGGTTGACAGAAATCAACTACCTGGGGCAGCTCAGTCATCCTAATCTTGTGAAACTAATTGGTTACTCCTTAGAAGATGATCACCGGATTTTGGTGTATGAATTTGTGGCCAAGGGTAGTTTGGATAATCACTTGTTCAGGAGGGGTTCTTACTTTCAACCACTCTCTTGGAACATCCGTATGAAGGTTGCTCTTGATGCTGCTAAGGGTCTTGCATTTCTTCACAGTGATGAAGTAGATGTAATATATAGGGACTTCAAAACTTCCAATATCTTACTTGATTCTAATTATAATGCAAAACTCTCTGATTTTGGGTTGGCAAAAAATGGACCCGAAGGTGATAAGAGCCATGTCTCTACAAGGGTAATGGGCACCTATGGCTATGCAGCTCCTGAGTATATAGCCACAGGTCACCTAACCAAAAAGAGTGACATATACAGTTTTGGAGTTGTTCTTCTGGAACTCATGTCAGGGAAACGTGCACTGGATGACAACAGGCCAAGCGGGGAGCACAGTTTAGTTGAATGGGCCAAACCACTCCTCACCAACAAACACAAGATCTCCCAAGTTATGGATGCTCGCATAGAAGGCCAATACTCAAAGCGCGAAGCAAAGAGAATAGCTCACCTTGCAATTCAATGCCTATCTACAGAACAGAAACTTAGACCAAACATAAATGAGGTGGTGAGATTATTGGAACATCTTCACGATTCCAAAGACACAAGCTCAAGCAGCAATGCTACTCCTAATCCAAGCTTATCTCCTTCTCCTCTTCGTTCATAG 1161 0.4332 MGCFFSVPSKIKAESPPRNGLNSKDGSKEENDLSCLSSKVSSSAMLLTPQSEDEILQASNLKNFTFNELRTATRNFRPDSMVGEGGFGCVFKGWIDEHTLAPTKPGTGMVIAVKRLNQESNQGHIEWLTEINYLGQLSHPNLVKLIGYSLEDDHRILVYEFVAKGSLDNHLFRRGSYFQPLSWNIRMKVALDAAKGLAFLHSDEVDVIYRDFKTSNILLDSNYNAKLSDFGLAKNGPEGDKSHVSTRVMGTYGYAAPEYIATGHLTKKSDIYSFGVVLLELMSGKRALDDNRPSGEHSLVEWAKPLLTNKHKISQVMDARIEGQYSKREAKRIAHLAIQCLSTEQKLRPNINEVVRLLEHLHDSKDTSSSSNATPNPSLSPSPLRS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0336 386 PANTHER KINASE 1B 26 375 - -
Gso18g0336 386 ProSiteProfiles Protein kinase domain profile. 76 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0336 386 MobiDBLite consensus disorder prediction 1 32 - -
Gso18g0336 386 MobiDBLite consensus disorder prediction 363 386 - -
Gso18g0336 386 ProSitePatterns Protein kinases ATP-binding region signature. 82 114 IPR017441 GO:0005524
Gso18g0336 386 Pfam Protein tyrosine and serine/threonine kinase 80 358 IPR001245 GO:0004672|GO:0006468
Gso18g0336 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gso18g0336 386 PANTHER OS01G0588500 PROTEIN-RELATED 26 375 - -
Gso18g0336 386 MobiDBLite consensus disorder prediction 367 386 - -
Gso18g0336 386 Gene3D Phosphorylase Kinase; domain 1 50 161 - -
Gso18g0336 386 SUPERFAMILY Protein kinase-like (PK-like) 52 364 IPR011009 -
Gso18g0336 386 CDD STKc_IRAK 82 361 - -
Gso18g0336 386 Gene3D Transferase(Phosphotransferase) domain 1 162 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0336 Gso-Chr18 3180851 3185026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0336 62 378 Glycoside Hydrolase AT3G07070 47.205 1.65e-99 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso18g0336 PK_Tyr_Ser-Thr 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0336 - - gmx:106795104 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0336 18 3180851 3185026 Gso18g0336 18 3180851 3185026 ECH
Gso18g0336 18 3180851 3185026 Gso13g1281 13 28122558 28126479 GST
Gso18g0336 18 3180851 3185026 Gso14g0590 14 5747704 5752150 PCT
Gso18g0336 18 3180851 3185026 Gso2g2109 2 45693949 45699204 PCT
Gso14g0590 14 5747704 5752150 Gso18g0336 18 3180851 3185026 PCT
Gso2g2109 2 45693949 45699204 Gso18g0336 18 3180851 3185026 PCT