Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0331 ATGAATATTCAAAAAACAATGGCCATGCTCAATATCATCTCCATTCTCTCTCTCTTACTCACTCAATCCCACGCCAAAATACCCGGCGTCTATTCCGGTGGGCCATGGCAAAGCGCTCACGCCACTTTCTACGGTGGCAGCGACGCCTCAGGAACTATGGGAGGAGCGTGTGGGTACGGGAACCTATATTCCCAAGGCTACGGTGTGAACACTGCGGCACTAAGCACTGCTTTGTTCAACAACGGTTTCAGCTGTGGAGCGTGTTTCGAAATCAAATGCACGGATGACCCGAAATGGTGCAACCCCGGTAACCCTTCCATCTTGGTCACCGCCACAAATTTCTGCCCTCCAAACTACGCTCTCCCCACCGACAATGGCGGCTGGTGCAACCCTCCCAGGCCGCACTTCGACCTCGCCATGCCCATGTTCCTCAAAATCGCTCAGTACCGCGCCGGCATCGTCCCCGTCTCTTATCGCCGGGTGGCTTGCAGGAAACAGGGAGGGATGAGGTTCACGATCAACGGCTTCCGTTACTTCAACTTGGTTTTGATCACCAACGTCGCGGGTGCAGGGGATATCATGAGGGCGAGCGTGAAAGGGTCAAAGACAGAGTGGATGAGCATGAGCCGCAACTGGGGGCAGAACTGGCAATCAAACGCGGTTCTGGTTGGTCAGTCACTCTCCTTTAGGGTCACAGGCAGTGACCGACGCACATCCACCTCGTGGAACATTGTCCCACGTAATTGGCAATTTGGCCAAACCTTCGCGGGAAAGAATTTTAGAATCTAA 789 0.5387 MNIQKTMAMLNIISILSLLLTQSHAKIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPKWCNPGNPSILVTATNFCPPNYALPTDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVSYRRVACRKQGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPRNWQFGQTFAGKNFRI* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0331 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 168 IPR007112 -
Gso18g0331 262 PANTHER EXPANSIN-A15 11 261 IPR002963 GO:0009664
Gso18g0331 262 SUPERFAMILY PHL pollen allergen 165 256 IPR036749 -
Gso18g0331 262 SMART dpbb_1 71 158 IPR007112 -
Gso18g0331 262 SUPERFAMILY Barwin-like endoglucanases 35 186 IPR036908 -
Gso18g0331 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Gso18g0331 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Gso18g0331 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Gso18g0331 262 PANTHER EXPANSIN-A4 11 261 - -
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Gso18g0331 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Gso18g0331 262 Gene3D - 169 260 IPR036749 -
Gso18g0331 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Gso18g0331 262 Gene3D - 22 164 IPR036908 -
Gso18g0331 262 Pfam Lytic transglycolase 71 158 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0331 Gso-Chr18 3130452 3132480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0331 10 262 Expansin Gene Family AT2G39700 82.609 1.75e-161 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0331 - - gmx:100798648 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0331 18 3130452 3132480 Gso18g0331 18 3130452 3132480 ECH
Gso11g1179 11 10605687 10608145 Gso18g0331 18 3130452 3132480 ECH
Gso18g0331 18 3130452 3132480 Gso13g1284 13 28170444 28172697 GST
Gso18g0331 18 3130452 3132480 Gso14g0583 14 5691233 5693727 PCT
Gso18g0331 18 3130452 3132480 Gso2g2117 2 45754527 45756866 PCT
Gso14g0583 14 5691233 5693727 Gso18g0331 18 3130452 3132480 PCT
Gso2g2117 2 45754527 45756866 Gso18g0331 18 3130452 3132480 PCT