Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0327 ATGGCTTTCGGCAACAGAATACTATACTTCATTACTTTCACTTGTCTCCTGCACTCAACAAAGCCTTCAAACTTTAACGGTGACACGCTATTCCAAGGTCATGATCAGCTCACAACAACCAACTCTTTGATCTGCTCTTCAGGTTTGTTCACACTGAGTTTCTTTCAGCTCGATGAGTCTGAATATTTCTACCTTGGAATTAGACTCTCAGTTGTTAATTCTAGTTATAACTGGGTTGCCAATAGAGACGAGCCAATCCGTGACCCTTCAGTGGCTCTCACAATTGATCAATATGGTAACTTGAAAATTATTTCCAACGGTGGAAATTCCACTATCATGCTCTATTCTTCTTCTAAACCTGAAAGTAATAGCAACAGTACTATCATCACCAGTGCCATCTTGCAAGATAATGGCAACTTTGTGCTTCAGGAAATAAACCAAGATGGATCTGTGAAGAACATATTGTGGCAAAGCTTTGATTATCCCACAAACATGCTTTTACCAGGGATGAAGCTAGGGTTTGACAGAAAAACAGGCCAAAATTGGTCTATAACATCATGGAGAAGTGGTAAGTCTCCTTTGTCAGGGTCCTTCAGCCTTGGCCTTGACCACAAAACGAAGGAAATGGTGATGTGGTGGAGAGAGAAGATTGTTTGGAGTAGTGGCCAATGGAGCAATGGAAATTTTGCCAATTTAAAGTCCTCACTTTACGAGAAGGACTTCGTTTTTGAGTACTACTCAGATGAAGATGAAACGTACGTGAAGTATGTGCCTGTTTATGGTTATATCATAATGGGATCTTTGGGTATAATATATGGTAGCAGTGGTGCCAGTTATTCATGCAGTGATAACAAGTACTTTCTGTCTGGTTGTTCAATGCCAAGTGCACACAAATGCACGGACGTTGATAGTTTGTACTTAGGCAGTAGCGAGAGTAGATATGGGGTAATGGCAGGGAAAGGGTTCATATTTGATGCAAAGGAGAAACTAAGCCATTTTGATTGCTGGATGAAGTGCTTGAATAATTGCTCTTGCGAGGCTTACTCTTATGTTAATGCGGATGCAACTGGTTGTGAGATATGGAGCAAGGGCACAGCAAACTTTTCTGACACTAACAATTTGATCACTGGTAGCCGCCAAATTTACTTCATTCGGAGTGGAAAAGGCAAGACTACTAGCATATGGATCATAAGCGGAATAGTAGGAGGAGCTCTTCTCCTGATCATTTCATGCTTTACGTGCATTAAGTTATGGATAAAACTCAAAGAAAGAGCTGAAAAGCGTAAGAAGCAAAAAGAACTACTAACTGATATTGGAAGAAGCACTGCCATTTCCATTGCATACGGTGAAAGAAAAGAACAGAGGAAAGATGGAAACACAAGTGATGAAACATATATATTTGACTTTCAAACTATTCTTGAGGCAACTGCTAATTTTTCTTCCACCAATAAAATAGGGGAGGGAGGCTTTGGACCTGTCTACAAGGGGAAGCTGTCAAATGGGCAAGAAATTGCTATAAAGAGACTATCCAAAAGTTCAGGACAGGGGCTGATAGAGTTCAAAAATGAAGCAATGCTAATCGTCAAACTTCAGCACACTAGTCTAGTGAGGCTTCTTGGTTTTTGTATAGACAGAGAAGAAAGAATATTAGTCTACGAGTATATGCCCAACAAAAGCTTGAATTTATATCTCTTTGATTCCAACAAGAGAAACATGTTAGAATGGAAGATACGATGTCAAATTATTGAAGGAGTTGCTCAAGGACTCGTATATTTACATCAATATTCAAGATTAAAAGTGATACACAGAGACTTGAAAGCTAGCAACATTTTATTGGACAATGAGTTGAATCCAAAAATATCAGATTTTGGAACAGCTAGAATATTTGAACTAGCAGAATCAGAAGAACAAACAAACAGAATTGTCGGGACATATGGCTATATGTCTCCAGAATATGCAATGAGGGGTGTTATCTCGACTAAAATAGATGTGTATAGTTTTGGAGTCTTGCTACTAGAGATAGTAAGTGGAAAGAAAAATAGTGATGATTACCCACTCAATCTTGTTGTTTATGCATGGAAATTATGGAACGAAGGTGAAGCTCTAAATCTAACGGACACATTGTTGGATGGGTCATGCCCTCCCATCCAAGTGTTACGCTACATTCATATTGGTCTTTTATGCACTCAAGATCAAGCAAAAGAGAGGCCAACTATGGTCCAAGTTGTTTCTTTTCTATCAAATGAAATTGCTGAATTGCCTCTACCTAAGCAACCAGGATTTTGTAGCAGTGAATCCATGGAAGAGATAGAGCAGCCTAAAAGTTGTTCAAATGAGATAACAATGTCATTGACATCAGACTTGCAGTGTGTTTCACAAATCACAACCACTTCACAGAACGTGCCAACCAACAATAATGGCTTTCAGCCAAAGTATACTATGCTTCATCGTTTTCACTTGTATCCTGCACATAACAAAACCTTCAAACTTGAACGAAGACACGTTACTCCAGGGTCTTCAGCTCACAACAACCCACCGTTTGATTTCATCTTCAAATTGGTATGCGTAGAGTTTCTTTCAGTTCAATGGCTCTCAAGATTTCTACCTTGGAATTAG 2616 0.3918 MAFGNRILYFITFTCLLHSTKPSNFNGDTLFQGHDQLTTTNSLICSSGLFTLSFFQLDESEYFYLGIRLSVVNSSYNWVANRDEPIRDPSVALTIDQYGNLKIISNGGNSTIMLYSSSKPESNSNSTIITSAILQDNGNFVLQEINQDGSVKNILWQSFDYPTNMLLPGMKLGFDRKTGQNWSITSWRSGKSPLSGSFSLGLDHKTKEMVMWWREKIVWSSGQWSNGNFANLKSSLYEKDFVFEYYSDEDETYVKYVPVYGYIIMGSLGIIYGSSGASYSCSDNKYFLSGCSMPSAHKCTDVDSLYLGSSESRYGVMAGKGFIFDAKEKLSHFDCWMKCLNNCSCEAYSYVNADATGCEIWSKGTANFSDTNNLITGSRQIYFIRSGKGKTTSIWIISGIVGGALLLIISCFTCIKLWIKLKERAEKRKKQKELLTDIGRSTAISIAYGERKEQRKDGNTSDETYIFDFQTILEATANFSSTNKIGEGGFGPVYKGKLSNGQEIAIKRLSKSSGQGLIEFKNEAMLIVKLQHTSLVRLLGFCIDREERILVYEYMPNKSLNLYLFDSNKRNMLEWKIRCQIIEGVAQGLVYLHQYSRLKVIHRDLKASNILLDNELNPKISDFGTARIFELAESEEQTNRIVGTYGYMSPEYAMRGVISTKIDVYSFGVLLLEIVSGKKNSDDYPLNLVVYAWKLWNEGEALNLTDTLLDGSCPPIQVLRYIHIGLLCTQDQAKERPTMVQVVSFLSNEIAELPLPKQPGFCSSESMEEIEQPKSCSNEITMSLTSDLQCVSQITTTSQNVPTNNNGFQPKYTMLHRFHLYPAHNKTFKLERRHVTPGSSAHNNPPFDFIFKLVCVEFLSVQWLSRFLPWN* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0327 871 Pfam Protein tyrosine and serine/threonine kinase 482 746 IPR001245 GO:0004672|GO:0006468
Gso18g0327 871 SMART serkin_6 479 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0327 871 SMART blect_4 35 162 IPR001480 -
Gso18g0327 871 PIRSF SRK 272 801 IPR024171 GO:0004674
Gso18g0327 871 PIRSF SRK 1 267 IPR024171 GO:0004674
Gso18g0327 871 Gene3D - 28 160 IPR036426 -
Gso18g0327 871 ProSiteProfiles PAN/Apple domain profile. 299 387 IPR003609 -
Gso18g0327 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Gso18g0327 871 SMART ntp_6 309 386 IPR003609 -
Gso18g0327 871 Pfam D-mannose binding lectin 77 188 IPR001480 -
Gso18g0327 871 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 191 IPR036426 -
Gso18g0327 871 Gene3D Phosphorylase Kinase; domain 1 452 554 - -
Gso18g0327 871 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 788 - -
Gso18g0327 871 CDD B_lectin 37 162 IPR001480 -
Gso18g0327 871 SUPERFAMILY Protein kinase-like (PK-like) 460 770 IPR011009 -
Gso18g0327 871 ProSiteProfiles Bulb-type lectin domain profile. 28 155 IPR001480 -
Gso18g0327 871 Gene3D Transferase(Phosphotransferase) domain 1 555 753 - -
Gso18g0327 871 ProSiteProfiles Protein kinase domain profile. 479 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0327 871 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 74 788 - -
Gso18g0327 871 Pfam PAN-like domain 331 364 IPR003609 -
Gso18g0327 871 CDD STKc_IRAK 485 746 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0327 Gso-Chr18 3078909 3086961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0327 450 761 Receptor kinase-like Gene Family AT4G23250 55.836 5.11e-117 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gso18g0327 PK_Tyr_Ser-Thr 9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0327 - - gsj:114396075 1721.06