Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0324 ATGAGTTTTGTTTTTCGAGGAACAAGAGCAGATATTGAAAATGGGTTTCCAGGATTTATACCTGAGAGGCGAGCATTGCGCGTTCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCAACAATGTTGAGGATGTATGCAACATGTCAACAGCTTCAAGCACAGGCCCAAGCTCATGCAGCTGCAGCCAGTGGCATTCTTGGCCACACAGAATTGAGGTTGCATATGCCACCATCAATAGCTCTTGCAAGCCGAGGGCGTCTGCAGGGTCTCAGACTTCAACTTGCACTTCTTGATCGGGAGTTTGATGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCTGATAATGTTTCTACTGCACCCTCTATGACGGAGGAAGAGATTAATGCTCTTCCTGTCCACAAATACAAGGTTTCTGGTCCTCAATGTGGTGGTTCCTCAATGCAACAAGCATCATCTTCCACTCCTGCTGAGAAGAAGCAAGATAATTCAAATGCTGTTGGGAGCATGAAAGCCTCTGATGATGACCTCACTTGCAGTGTATGCTTGGAGCAAGTTAATGTTGGTGACGTACTGCGAAGCTTACCTTGCTTGCATCAGTTTCACGCAAATTGCATCGATCCCTGGCTGCGCCAACAAGGGACATGCCCTGTATGTAAATTTCGAGCTGGATCTGGTTGGAGTGACAATGGACATAATGATATCATCGCGGACATGGTCTGA 825 0.4558 MSFVFRGTRADIENGFPGFIPERRALRVHATRPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGILGHTELRLHMPPSIALASRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVSTAPSMTEEEINALPVHKYKVSGPQCGGSSMQQASSSTPAEKKQDNSNAVGSMKASDDDLTCSVCLEQVNVGDVLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWSDNGHNDIIADMV* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0324 274 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Gso18g0324 274 CDD RING-H2_PA-TM-RING 212 254 - -
Gso18g0324 274 MobiDBLite consensus disorder prediction 174 206 - -
Gso18g0324 274 Pfam Ring finger domain 212 254 IPR001841 -
Gso18g0324 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 259 IPR013083 -
Gso18g0324 274 SMART ring_2 213 253 IPR001841 -
Gso18g0324 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Gso18g0324 274 MobiDBLite consensus disorder prediction 176 205 - -
Gso18g0324 274 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Gso18g0324 274 SUPERFAMILY RING/U-box 208 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0324 Gso-Chr18 2989167 2993907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0324 1 274 C3H Transcription Factor Family AT3G55530 76.812 1.37e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0324 K16283 - gmx:100777936 499.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0324 18 2989167 2993907 Gso18g0324 18 2989167 2993907 ECH
Gso18g0324 18 2989167 2993907 Gso13g1291 13 28323668 28328593 GST