Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0323 ATGATGATGTCTTCCGGGACATCCTCGTACTGGTGCTACCGCTGCAGCCGCTTCGTTCGCGTCTGGCCCCACCACACCATCGTCTGTCCCGACTGCGACGGCGGCTTCATCGAAGAAATCGAACACCCGCCCCGCTCCGTCCACCTCGACCCCCGCCGCCGCCAACGCTTCCCCGCCGCCGCCATGTACATGATCGGCCAGCGCCCTTCCTCGGACCACCCCTCCCGCCCCGCTGCCCTCCGCCGCACCCGCCGCAACGGCGGCGACCGCTCCCCCTTCAACCCCGTCATCGTCCTCCGCGGCGGCGCAGCCACCGCGGAGGATGAAAGTCGCGGCTTTGAACTCTTCTACGACGACGGCGCCGGCTCCGGCCTCCGACCCTTACCACCTAGCATGTCAGAGTTTCTCCTCGGATCTGGCTTCGACAGACTCTTGGAACAACTCTCTCAGATTGAGATCAACGGTATTGGACGGTACGAGCACCCTCCTGCTTCAAAAGCAGCCATTGATTCATTACCAACCATCGAAATTGATGACACCCATTTAGCCATGGAGTCACACTGCGCGGTTTGTAAGGAAGCTTTCGAATTAGGAACTGCAGTTAGAGAAATGCCATGCAAGCACATATATCATCCTGAATGCATATTACCGTGGCTCGCACTTCACAACTCTTGCCCCGTTTGTCGCCACGAGTTACCCGCTGATACCCCGAATCCAAATCAAAATCAAAATCCGTCTCAAAATGTTGCCTTGAACGAGGAGGAGAATGTGGGGTTGACGATTTGGAGGTTGCCTGGTGGAGGGTTTGCGGTGGGTAGATTCTCCGGTGGGAGAAGAGGTGCTGAGAGAGAGCTTCCTGTGGTTTACACTGAAATGGATGGTGGGTTTAACAATGGGGGGGGTGAGCCGAGGAGGATTTCTTGGTCCAGAGGGAATAGAGGGAGGGAGAGTGGAGGGTTGACTAGGTTTTTCCGCAATCTGTTTGGTTGCTTCAGAGGAAGTAGTACTCAGCGTTCTGCTTCTAGTAGAGAGTCTATGAGGGCGAGTTCCTCTCGTTCTAGTACTATGGATCCTTCGTTGCGGTCTCGGAGGACTTGGTCTATGGATGTAAACAGTGGGATGAGAGCGTGGTAG 1134 0.5617 MMMSSGTSSYWCYRCSRFVRVWPHHTIVCPDCDGGFIEEIEHPPRSVHLDPRRRQRFPAAAMYMIGQRPSSDHPSRPAALRRTRRNGGDRSPFNPVIVLRGGAATAEDESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSLPTIEIDDTHLAMESHCAVCKEAFELGTAVREMPCKHIYHPECILPWLALHNSCPVCRHELPADTPNPNQNQNPSQNVALNEEENVGLTIWRLPGGGFAVGRFSGGRRGAERELPVVYTEMDGGFNNGGGEPRRISWSRGNRGRESGGLTRFFRNLFGCFRGSSTQRSASSRESMRASSSRSSTMDPSLRSRRTWSMDVNSGMRAW* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0323 377 Pfam Ring finger domain 187 229 IPR001841 -
Gso18g0323 377 Pfam Protein of unknown function (DUF1117) 257 355 IPR010543 -
Gso18g0323 377 SUPERFAMILY RING/U-box 168 240 - -
Gso18g0323 377 MobiDBLite consensus disorder prediction 67 92 - -
Gso18g0323 377 ProSiteProfiles Zinc finger RING-type profile. 188 229 IPR001841 -
Gso18g0323 377 SMART ring_2 188 228 IPR001841 -
Gso18g0323 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 4 329 - -
Gso18g0323 377 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 329 - -
Gso18g0323 377 CDD RING-H2_RNF126_like 188 229 - -
Gso18g0323 377 Pfam zinc-ribbon 9 40 IPR039525 GO:0061630
Gso18g0323 377 MobiDBLite consensus disorder prediction 334 365 - -
Gso18g0323 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 235 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0323 Gso-Chr18 2977779 2979936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0323 127 238 C3H Transcription Factor Family AT5G01980 41.071 5.45e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0323 - K11982 gmx:100807324 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0323 18 2977779 2979936 Gso18g0323 18 2977779 2979936 ECH
Gso18g0323 18 2977779 2979936 Gso13g1293 13 28343849 28345814 GST