Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g0316 | ATGGAGGAGTCTCAGTACTTGCTGTGGATCAAGAGAAAACAAATCTTGAAGTCACACATTCAACAACCATTTGGAACCAGCAACAACAACAACTCATCATCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGGTCTTACTCATGCAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGCCTTAGTCACCATAATGAAGCCCTTCAACATCATCAAAAAAATGATTGTACAGTTGCAACAAGCAAAGTCTCATCTTCTAGGGCCTCAACTATATCTACCCAAGAAATTTGTTCTCATCAGCCTACCATGTCCCTTTATTCTTCCTTAATTGGGTGGGGACATCATCACCACATGGAGTCTCCTGATTCAGAACCAAAAGGGCAAGTGAATGCAAGGGAAGAATTTTTAAAAGGTTTGGGTTGTAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTGCAGTGTTTGGCCAAAAATTACCAACAACTGAATCATGTGGGGACGAAAGCATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGGAGTTTTCCTCAAGCCATGTTCAAATGATAGAAACCTAACTTTTCAGTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG | 780 | 0.4218 | MEESQYLLWIKRKQILKSHIQQPFGTSNNNNSSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNEALQHHQKNDCTVATSKVSSSRASTISTQEICSHQPTMSLYSSLIGWGHHHHMESPDSEPKGQVNAREEFLKGLGCNDYVETSLSVGQSAVFGQKLPTTESCGDESISYKRSKTSMPPLPGVFLKPCSNDRNLTFQSAEFVLGLKPGMEDLDLELRLGKPQKVI* | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g0316 | 259 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 58 | 85 | IPR013087 | - | |
Gso18g0316 | 259 | Pfam | C2H2-type zinc finger | 58 | 82 | - | - | |
Gso18g0316 | 259 | PANTHER | OS07G0101800 PROTEIN | 1 | 259 | - | - | |
Gso18g0316 | 259 | MobiDBLite | consensus disorder prediction | 90 | 111 | - | - | |
Gso18g0316 | 259 | Gene3D | Classic Zinc Finger | 55 | 120 | - | - | |
Gso18g0316 | 259 | SMART | c2h2final6 | 58 | 80 | IPR013087 | - | |
Gso18g0316 | 259 | Coils | Coil | 84 | 104 | - | - | |
Gso18g0316 | 259 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 259 | - | - | |
Gso18g0316 | 259 | SUPERFAMILY | beta-beta-alpha zinc fingers | 55 | 85 | IPR036236 | - | |
Gso18g0316 | 259 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 60 | 80 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g0316 | Gso-Chr18 | 2889707 | 2891036 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g0316 | 29 | 90 | C2H2 Transcription Factor Family | AT2G37740 | 74.194 | 7.09e-27 | 104 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Gso18g0316 | zf-C2H2_6 | 2e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g0316 | - | - | gmx:102663477 | 521.546 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g0316 | 18 | 2889707 | 2891036 | Gso13g1303 | 13 | 28434226 | 28435381 | GST | |
Gso18g0316 | 18 | 2889707 | 2891036 | Gso14g0570 | 14 | 5471517 | 5472710 | PCT | |
Gso18g0316 | 18 | 2889707 | 2891036 | Gso2g2128 | 2 | 45928767 | 45929627 | PCT |