Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0316 ATGGAGGAGTCTCAGTACTTGCTGTGGATCAAGAGAAAACAAATCTTGAAGTCACACATTCAACAACCATTTGGAACCAGCAACAACAACAACTCATCATCATGGGAGGAAAGGGCTTTTGCAGAAGATGCTGCTAGGATACTTGGTGGGTGCATATGGCCTCCAAGGTCTTACTCATGCAATTTCTGTAAAAGAGAGTTTAGGTCTGCTCAGGCTCTAGGGGGACACATGAATGTGCACAGGAGGGACAGGGCTAGACTCAAACAAAGCCTTAGTCACCATAATGAAGCCCTTCAACATCATCAAAAAAATGATTGTACAGTTGCAACAAGCAAAGTCTCATCTTCTAGGGCCTCAACTATATCTACCCAAGAAATTTGTTCTCATCAGCCTACCATGTCCCTTTATTCTTCCTTAATTGGGTGGGGACATCATCACCACATGGAGTCTCCTGATTCAGAACCAAAAGGGCAAGTGAATGCAAGGGAAGAATTTTTAAAAGGTTTGGGTTGTAATGATTATGTTGAAACAAGTTTGTCTGTGGGACAAAGTGCAGTGTTTGGCCAAAAATTACCAACAACTGAATCATGTGGGGACGAAAGCATCAGTTATAAAAGATCAAAGACTTCTATGCCTCCTTTGCCTGGAGTTTTCCTCAAGCCATGTTCAAATGATAGAAACCTAACTTTTCAGTCTGCAGAATTTGTACTTGGACTCAAGCCTGGAATGGAAGACTTAGATCTTGAACTCAGGCTGGGGAAGCCACAGAAAGTTATTTAG 780 0.4218 MEESQYLLWIKRKQILKSHIQQPFGTSNNNNSSSWEERAFAEDAARILGGCIWPPRSYSCNFCKREFRSAQALGGHMNVHRRDRARLKQSLSHHNEALQHHQKNDCTVATSKVSSSRASTISTQEICSHQPTMSLYSSLIGWGHHHHMESPDSEPKGQVNAREEFLKGLGCNDYVETSLSVGQSAVFGQKLPTTESCGDESISYKRSKTSMPPLPGVFLKPCSNDRNLTFQSAEFVLGLKPGMEDLDLELRLGKPQKVI* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0316 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Gso18g0316 259 Pfam C2H2-type zinc finger 58 82 - -
Gso18g0316 259 PANTHER OS07G0101800 PROTEIN 1 259 - -
Gso18g0316 259 MobiDBLite consensus disorder prediction 90 111 - -
Gso18g0316 259 Gene3D Classic Zinc Finger 55 120 - -
Gso18g0316 259 SMART c2h2final6 58 80 IPR013087 -
Gso18g0316 259 Coils Coil 84 104 - -
Gso18g0316 259 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 259 - -
Gso18g0316 259 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Gso18g0316 259 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0316 Gso-Chr18 2889707 2891036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0316 29 90 C2H2 Transcription Factor Family AT2G37740 74.194 7.09e-27 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g0316 zf-C2H2_6 2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0316 - - gmx:102663477 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0316 18 2889707 2891036 Gso13g1303 13 28434226 28435381 GST
Gso18g0316 18 2889707 2891036 Gso14g0570 14 5471517 5472710 PCT
Gso18g0316 18 2889707 2891036 Gso2g2128 2 45928767 45929627 PCT