Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0307 ATGGCTGGAATTTGCTGTGGTGTTGTTGGAGAAGGTGACACTCCGGCTCCACTCGAGCCCACTCCTCGCCCCTCCAGGCGCCGGAGTTTGGACATCTTACCTTTAAAATATATCGCCGACATGCCCATGCCGCCGCCGGAGGGTTTACGGAAGCGTCCCAAGCTCAACCTCAGGGACTGCGATAACGCAATTGAAAATTGCGACGAATCCACTGGACACAAGGTGACGAAGAAGGAATCCAAAGTAGACTACGCCGACGACGTCGTTTCGGAAACTAAGAACGTAACTGTTTCGGAAGTTGAAGAAGAATCTCCCAAGTTCGGCGTGACGTCCGTTTGCGGCAGGAGAAGAGACATGGAAGATTCCGTCTCGGTGCGGCCTTGCTTCACCCAAGGCTTCCACTACTTCGGCGTCTTCGACGGTCACGGTTGCTCTCATGTTGCGACTATGTGTAAGGAGCGGCTACACGAGATCGTGAATGAAGAAATTGAAAGCGCGCGCGAGAATTTGGAGTGGAAACTGACGATGGAGAACGGATTCGCTCGCATGGACGACGAGGTTCATCGCCGGAGCCAGAGCAACCAGACCTTCACCTGCAGGTGTGAGCTCCAGACTCCTCACTGCGACGCCGTCGGATCCACCGCCGTCGTCGCCGTCGTCACACCGGACAAAATCGTCGTCTCTAACTGCGGCGACTCCCGCGCCGTCCTCTGCCGCAACGGCGTCGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGACCCGACGAATTACTCCGAGTCCAATCCAAGGGAGGGCGCGTGATTTACTGGGACGGTCCGAGAGTGCTTGGTGTGTTAGCAATGTCTCGAGCCATAGGTGACAATTATCTGAAGCCGTACGTGATTTCAGAACCGGAGGTGATGGTGACGGAGAGGACGGAGGAGGACGAGTGTTTGATACTGGCGAGTGATGGGTTGTGGGATGTGGTGTCGAATGAGACCGCATGTGGGGTGGTGAGGATGTGCCTCAAGGCGCAGAAGCCGCCGGGGTCTCCGGGGAGTGACGTGGCGGCTGACGGTTCCGACCGTGCTTGCTCCGATGCGTCGATTCTGTTGACCAAGTTGGCGCTGGCAAGGCATAGTTCGGATAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGGGATCAACGACAATCATCAAACTACAACGACGTTAATTAA 1203 0.5603 MAGICCGVVGEGDTPAPLEPTPRPSRRRSLDILPLKYIADMPMPPPEGLRKRPKLNLRDCDNAIENCDESTGHKVTKKESKVDYADDVVSETKNVTVSEVEEESPKFGVTSVCGRRRDMEDSVSVRPCFTQGFHYFGVFDGHGCSHVATMCKERLHEIVNEEIESARENLEWKLTMENGFARMDDEVHRRSQSNQTFTCRCELQTPHCDAVGSTAVVAVVTPDKIVVSNCGDSRAVLCRNGVAIPLSSDHKPDRPDELLRVQSKGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVMVTERTEEDECLILASDGLWDVVSNETACGVVRMCLKAQKPPGSPGSDVAADGSDRACSDASILLTKLALARHSSDNVSVVVVDLRRDQRQSSNYNDVN* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0307 400 Pfam Protein phosphatase 2C 107 378 IPR001932 -
Gso18g0307 400 SMART PP2C_4 94 384 IPR001932 -
Gso18g0307 400 Gene3D - 101 395 IPR036457 -
Gso18g0307 400 SUPERFAMILY PP2C-like 104 387 IPR036457 -
Gso18g0307 400 SMART PP2C_SIG_2 120 386 IPR001932 -
Gso18g0307 400 ProSiteProfiles PPM-type phosphatase domain profile. 106 386 IPR001932 -
Gso18g0307 400 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Gso18g0307 400 CDD PP2Cc 106 342 IPR001932 -
Gso18g0307 400 PANTHER ALPHABET, ISOFORM E-RELATED 44 391 - -
Gso18g0307 400 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 44 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0307 Gso-Chr18 2802884 2804863 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0307 1 361 PP2C-type Phosphatase Gene Family AT3G11410 58.245 5.00e-143 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0307 K14497 - gmx:100796161 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0307 18 2802884 2804863 Gso18g0307 18 2802884 2804863 ECH
Gso18g0307 18 2802884 2804863 Gso13g1313 13 28548964 28550956 GST
Gso18g0307 18 2802884 2804863 Gso14g0569 14 5459152 5461460 PCT
Gso18g0307 18 2802884 2804863 Gso2g2129 2 45946091 45948189 PCT
Gso14g0569 14 5459152 5461460 Gso18g0307 18 2802884 2804863 PCT
Gso2g2129 2 45946091 45948189 Gso18g0307 18 2802884 2804863 PCT