Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0301 ATGAAGGCACTAATTCTTGTTGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTCAGTGTTCCCAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTCTGCATCAGATAGAAGCTCTCAAGGCCATTGGCGTCAATGAAGTGGTACTAGCTATCAATTACCAACCAGAGGTCATGTTGAATTTCTTGAAGGAGTTTGAGGCAAAACTTGGTATCAAAATCACTTGTTCTCAAGAAACTGAACCGCTAGGTACTGCAGGCCCCTTGGCTCTTGCGAGGGATAAGCTAATAGATGACTCTGGAGAGCCATTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTACCCACTTAAAGAAATGATTGAATTCCACAAAACCCATGGAGGAGAGGCTACCATAATGGTGACAAAGGTCGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACTACCGGGCAGGTTGAGAGATTTGTAGAGAAACCAAAGTTGTTTGTTGGCAACAAAATCAATGCTGGAATCTACCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTCCTGCCAGGATTCTGGATGGACATTGGACAACCAAAGGACTATATTTCTGGCCTGACACTTTACCTGGACTCGCTGAGGAAAAAGTCTCCTTCTAAACTGGCCAGTGGTCCTCACTTTGTGGGGAATGTCATTGTGCATGAAACTGCCACTATTGGCGAGGGATGTCTCGTTGGACCTGATGTTGCAATCGGTCCTGGCTGTGTTGTTGAGTCAGGTGTCAGGCTTTCACGCTGCACAGTTATGCGAGGAGTTCGGATTAAAAAGCATACTTGCATATCCAACAGTATCATTGGGTGGCATTCCACTGTTGGGCAATGGGCCCGTGTGGAGAATATGACTATCCTTGGAGAAGATGTCCATGTTTGTGATGAAGTTTATAGCAATGGTGGTGTAGTTTTGCCCCACAAGGAGATCAAGTCAAACATTCTAAAGCCAGAGATTGTCATGTGA 1086 0.4475 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKTHGGEATIMVTKVDEPSKYGVVVMEETTGQVERFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPKDYISGLTLYLDSLRKKSPSKLASGPHFVGNVIVHETATIGEGCLVGPDVAIGPGCVVESGVRLSRCTVMRGVRIKKHTCISNSIIGWHSTVGQWARVENMTILGEDVHVCDEVYSNGGVVLPHKEIKSNILKPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0301 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Gso18g0301 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Gso18g0301 361 Pfam Bacterial transferase hexapeptide (six repeats) 261 295 IPR001451 -
Gso18g0301 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Gso18g0301 361 Gene3D Hexapeptide repeat proteins 237 358 - -
Gso18g0301 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 231 IPR029044 -
Gso18g0301 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
Gso18g0301 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0301 Gso-Chr18 2725329 2729262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0301 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 23.116 6.25e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0301 K00966 - gmx:100818016 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0301 18 2725329 2729262 Gso18g0301 18 2725329 2729262 ECH
Gso18g0301 18 2725329 2729262 Gso13g1321 13 28631882 28635719 GST
Gso18g0301 18 2725329 2729262 Gso14g0564 14 5400181 5403364 PCT
Gso18g0301 18 2725329 2729262 Gso2g2134 2 46001477 46004497 PCT
Gso14g0564 14 5400181 5403364 Gso18g0301 18 2725329 2729262 PCT
Gso2g2134 2 46001477 46004497 Gso18g0301 18 2725329 2729262 PCT