Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0263 ATGGAAGAGGGCATGTCAGAGTTTTGTATTAGAGGTGGTAACAGTGGCAGTGCCACTGGCACCAAGTGTGGGCGATGGAATCCCACTACTGAACAGGTTAAGGTTCTGACTGATCTTTTCAGTTCTGGACTCCGCACCCCTAGCACTGATCAGATTCAAAAGATCTCTAATCAGCTTAGTTTTTATGGTAAGATTGAGAGCAAGAACGTGTTCTATTGGTTTCAGAACCATAAGGCTAGGGAGAGACAAAAGCGTCGCAAGGTTGATAACGATGTGATTCGTAGTGAAAACTCTATCTCCATCAATTCTTTTACACAAACAGATTTTACTCAGCTATATCAGGTTTCTGAGCCCGAGAGGGTGATGGAGACTCTTCAGCTCTTCCCCTTGAACTCCTTTGGTGAATCAGAATCAAAGAATATGAGGGTCCATGCAAGTGATCAATGCAGGGATAACACTATGTTTTCATACACAGTTGGGGAACAAATGGATCATCCACCATTAGATCTTCGCTTGAGTTTTATGTGA 528 0.4299 MEEGMSEFCIRGGNSGSATGTKCGRWNPTTEQVKVLTDLFSSGLRTPSTDQIQKISNQLSFYGKIESKNVFYWFQNHKARERQKRRKVDNDVIRSENSISINSFTQTDFTQLYQVSEPERVMETLQLFPLNSFGESESKNMRVHASDQCRDNTMFSYTVGEQMDHPPLDLRLSFM* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0263 175 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Gso18g0263 175 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Gso18g0263 175 SMART HOX_1 21 88 IPR001356 GO:0003677
Gso18g0263 175 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 164 - -
Gso18g0263 175 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 164 IPR044555 GO:0003700|GO:0099402
Gso18g0263 175 SUPERFAMILY Homeodomain-like 24 86 IPR009057 -
Gso18g0263 175 CDD homeodomain 25 85 IPR001356 GO:0003677
Gso18g0263 175 Gene3D - 22 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0263 Gso-Chr18 2312960 2313890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0263 10 175 Wox Gene Family AT3G11260 56.593 1.65e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso18g0263 Homeodomain 3.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0263 - - gmx:100791433 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0263 18 2312960 2313890 Gso18g0263 18 2312960 2313890 ECH
Gso18g0263 18 2312960 2313890 Gso13g1355 13 29041060 29042265 GST
Gso18g0263 18 2312960 2313890 Gso2g2168 2 46346935 46348370 PCT
Gso2g2168 2 46346935 46348370 Gso18g0263 18 2312960 2313890 PCT