Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g0262 | ATGGCGGCGAGCGATCGCACAGTGTTGCAATTCTCTTCATCATCTTCTTCTTCTTCGCAGAGCTTGTCCGCGAAGGTCCACCCTCTGGTCATCTTCAACATCTGCGATTGCTATGTTCGGCGCCCTGACCAAGCCGACCGCGTCATCGGAACCCTACTCGGCTCCGTCCTTCCCGACGGAACCGTCGATATCCGAAATTCCTATGCTGTTCCTCACAACGAGTCTATCGAACAGGTTGCATTGGATATAGAGTACCACCACAATATGTTAATATCCCACCAAAAAGTGAATCCAAAGGAAATCATAGTAGGATGGTATTCAACCGGTCTTGGAGTAACTGGTGGTAGTGCATTAATCCACGAGTTTTATTCTCGAGAAGTGCCCAATCCCATACACTTGACTGTTGATACAGGATTTACAAATGGAGCGGGTACGATTAAAGCATACGTGTCTAACAATTTATCTCTTGGAGAACGTCAAATTGCTGCACAGTTTCAAGAAATTCCATTAGATCTTCGTATGGTGGAAGCTGAGCGAATTGGATTTGATATGCTGAAGGCAACTGCAGTTGACAAAATTCCCTCAGATTTAGAAGGGATGGAAGCATCAATGCAACATCTGCTAGTCTTGATTGATGACATCTACAAATATGTTGACGATGTTGTGGAAGGACGAGTGGCACCAGACAACAAAATCGGGAGATTTATATCAGAAGCTGTAGGTTCCCTTCCCAAATTGTCCCCATCAGTTTTTGATAAGCTTGTGAATGACAGTTTGCAGGATCACTTGCTTTTGCTGTATTTATCTAGTATCACAAGAACGCAGCTTAGCTTGGCTGAAAAATTGAACACAGCTGCTCAGATTCTGTGA | 870 | 0.4437 | MAASDRTVLQFSSSSSSSSQSLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVLPDGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTNGAGTIKAYVSNNLSLGERQIAAQFQEIPLDLRMVEAERIGFDMLKATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDNKIGRFISEAVGSLPKLSPSVFDKLVNDSLQDHLLLLYLSSITRTQLSLAEKLNTAAQIL* | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g0262 | 289 | ProSiteProfiles | MPN domain profile. | 24 | 155 | IPR037518 | - | |
Gso18g0262 | 289 | Pfam | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 22 | 127 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Gso18g0262 | 289 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F | 10 | 288 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Gso18g0262 | 289 | Pfam | Maintenance of mitochondrial structure and function | 176 | 282 | IPR024969 | - | |
Gso18g0262 | 289 | CDD | MPN_eIF3f | 25 | 282 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Gso18g0262 | 289 | Gene3D | Cytidine Deaminase, domain 2 | 10 | 190 | - | - | |
Gso18g0262 | 289 | Hamap | Eukaryotic translation initiation factor 3 subunit F [EIF3F]. | 22 | 285 | IPR027531 | GO:0003743|GO:0005852|GO:0006413|GO:0031369 | |
Gso18g0262 | 289 | SMART | pad1_6 | 23 | 154 | IPR000555 | GO:0005515|GO:0008233|GO:0008237 | |
Gso18g0262 | 289 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED | 10 | 288 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g0262 | Gso-Chr18 | 2294400 | 2297949 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g0262 | 2 | 289 | Eukaryotic Initiation Factors Gene Family | AT2G39990 | 76.289 | 8.49e-161 | 447 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g0262 | K03249 | - | gmx:100811797 | 523.472 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g0262 | 18 | 2294400 | 2297949 | Gso18g0262 | 18 | 2294400 | 2297949 | ECH | |
Gso18g0262 | 18 | 2294400 | 2297949 | Gso13g1356 | 13 | 29060296 | 29064345 | GST |