Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0259 ATGGCAAGGAAACTGACGAAAGCGCAGAAGAAGATAGCATACGATGCGAAGCTGTGCAAGCTTCTGGACAACTACACCCAAATTCTGGTGGTGGCTGCGGACAACGTCGGATCGAACCAGCTTCAGAACATTCGACACGGTCTGCGTGGCGACTCGGTCATTCTGATGGGAAAGAACACCATGATGAAGCGAACTATTAAGATCCATGCCCAGAACACCGGCAACACCACCATCCTCAACCTTATTCCCCTTCTTGTCGGTAACGTGGGGCTGATTTTCACCAAAGGTGACGTCAAGGAGGTTAAGGAAGTGGTTTCCAAGTACAAGGTGGCAGCTCCTGCTCGTGTAGGTTTAGTTGCACCTATTGATGTTGTTGTTCCCCCAGGCAACACAGGGCTGGATCCCTCTCAGACCTCTTTCTTTCAGGTGCTTAACATCCCTACCAAGATTAATAAGGGTACTGTGGAAATTATCACCCCTGTGGAACTCATTATGAAGGGAGACAAGGTTGGCTCTTCTGAAGCTGCTTTGCTTTCCAAGCTTGCGATAAGGCCCTTCTCATATGGGCTTGCTGTTGTTTCTGTTTATGAGAATGGTTCAGTTTTTAGCCCTGAGGTTCTTGATCTCACTGAAGATGACCTCGTTGTGAAGTTTGCTGAGGGTGTCTGTATGGTGTCTTCACTTTCCTTGGCTATCTCCTACCCATCCATTGCAGCTGCTCCACACATGTTTGTCAATTCCTACAAGAACATCCTGGCTGTTGCAGTGGCAACCGAATATTCGTTCCCTGAGGCAGACAAGGTTAAGGAGTACTTGAAGGATCCTAGTAAATTTGCTGTAGCTGTTGTTGCCGCACCTGCTACTAAGTCTGGCGCTGCTCCAGCTGCAGCATCCAAGGTGGAGGAAAAGAAGGAAGAAGCCGCAGATGAATCCGATGATGACATGGGCTTCAGTTTGTTTGATTAA 966 0.4824 MARKLTKAQKKIAYDAKLCKLLDNYTQILVVAADNVGSNQLQNIRHGLRGDSVILMGKNTMMKRTIKIHAQNTGNTTILNLIPLLVGNVGLIFTKGDVKEVKEVVSKYKVAAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIMKGDKVGSSEAALLSKLAIRPFSYGLAVVSVYENGSVFSPEVLDLTEDDLVVKFAEGVCMVSSLSLAISYPSIAAAPHMFVNSYKNILAVAVATEYSFPEADKVKEYLKDPSKFAVAVVAAPATKSGAAPAAASKVEEKKEEAADESDDDMGFSLFD* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0259 321 MobiDBLite consensus disorder prediction 286 321 - -
Gso18g0259 321 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Gso18g0259 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 321 - -
Gso18g0259 321 Gene3D - 113 185 IPR043164 -
Gso18g0259 321 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 321 - -
Gso18g0259 321 MobiDBLite consensus disorder prediction 307 321 - -
Gso18g0259 321 CDD Ribosomal_P0_L10e 9 185 - -
Gso18g0259 321 PIRSF L10E 1 321 IPR030670 GO:0042254
Gso18g0259 321 Pfam 60s Acidic ribosomal protein 235 320 - -
Gso18g0259 321 Pfam Ribosomal protein L10 7 108 IPR001790 -
Gso18g0259 321 Gene3D - 6 209 IPR043141 -
Gso18g0259 321 SUPERFAMILY Ribosomal protein L10-like 8 134 IPR043141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0259 Gso-Chr18 2271346 2274463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0259 1 320 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 76.875 1.28e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0259 K02941 - gmx:100791968 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0259 18 2271346 2274463 Gso18g0259 18 2271346 2274463 ECH
Gso18g0259 18 2271346 2274463 Gso13g1360 13 29104741 29107461 GST