Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0244 ATGGCCTTCAGAGGAACTGGAACGCTGATTTTGGTGAGTCTCTTATGGCTTTTCTTCCTCTGCGCCACCATTGCTTTCTTTCAGCTCCACTTGGTAGACAACCGAACCAGCAACCCTTCCTCTCGCAGTAACTTCATTGCAACTCAACATGATCGCTCAGATACCCCTTTGGAACAGGATTTGGAGGGTGTCACTCACAAGGTGTATTTTGATATTCAGATCCATGGCAAAGTAGTAGGTCGCATAGTCATGGGCCTTTTTGGGAACACAGTACCAAAAACTGCAGAAAACTTTCGGGCGCTTTGTACAGGAGAGAAAGGAGTGGGAAGAAGTGGGAAGTCTCTTCATTATAAAGGGAGCACATTCCATAGGATTATGCCGAGCTTTATGGTCCAGGGGGGTGATTTCACCCGTGGTGATGGAAGAGGTGGAGAATCAATCTATGGTGATAAGTTTGCCGATGAAAACTTTAAGCTGAAGCATACTGGGCCAGGATACTTATCCATGGCAAATTCTGGGGAAGACACCAACGGCTCCCAGTTCTTCATAACAACAGTTAAAACCAGCTGGCTGGATGGACACCATGTCGTATTCGGCAAGGTACTTTCCGGTATGGACGTTTTGTACAAGATTGAAGCAGAAGGAAGTGAAAATGGCTCGCCAAAAAACAAGGTTGTCATATTAGACAGCGGAGAATTAACTTCATGA 708 0.4576 MAFRGTGTLILVSLLWLFFLCATIAFFQLHLVDNRTSNPSSRSNFIATQHDRSDTPLEQDLEGVTHKVYFDIQIHGKVVGRIVMGLFGNTVPKTAENFRALCTGEKGVGRSGKSLHYKGSTFHRIMPSFMVQGGDFTRGDGRGGESIYGDKFADENFKLKHTGPGYLSMANSGEDTNGSQFFITTVKTSWLDGHHVVFGKVLSGMDVLYKIEAEGSENGSPKNKVVILDSGELTS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0244 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-2 41 233 - -
Gso18g0244 235 CDD cyclophilin_ABH_like 66 231 - -
Gso18g0244 235 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 69 232 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 41 233 - -
Gso18g0244 235 Gene3D - 56 235 IPR029000 -
Gso18g0244 235 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 70 229 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 117 134 IPR020892 GO:0003755|GO:0006457
Gso18g0244 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 86 101 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 165 180 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 192 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 208 IPR002130 GO:0000413|GO:0003755
Gso18g0244 235 SUPERFAMILY Cyclophilin-like 64 233 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0244 Gso-Chr18 2122829 2125718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0244 80 230 U-box Gene Family AT5G67530 41.830 2.94e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0244 K01802 - gmx:100792649 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0244 18 2122829 2125718 Gso18g0244 18 2122829 2125718 ECH
Gso18g0244 18 2122829 2125718 Gso13g1375 13 29269751 29273127 GST