Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0240 ATGACATCACCATGGAATAAGATTCACATTCACCACTCTCATCCTTCCCCGCCACCGCCACCGCTACTCTCCGACTCCGACTCCGACGGCGGCGATTCCTCTTCCTCCGCCCCCCTCCGCCACTCGGACCTCTCCGACTCCATCTTTAAGCCCTACCTCGAACTCTCCGGCCACTCCGGCACCGACCTCTCGAAGATCCAATCCTTCCTAACCTCTTCCTCCGCCGGCGCCCTCTCGTGCCTGATCTGCCTCGAACGCATCAAACCCTCGGACCCCACCTGGTCCTGCTCCTCCCTCTGCTTCGCCGTCTTCCACCTCTTCTGCATCCAGAGCTGGGCCCGGCAGGCCTCCGACCTCGCCGCCGCACGCGCCGTCACACGCCTTTCCATCTCCTCCGCCAGCGCCTCCGACACCGCCCTCTGGAACTGCCCCAAATGCAGATCGGAATACAACAAATCACACATTCCCAAAACCTACTTTTGCTTCTGCGGCAAAATAGAGAACCCTCCCAATGATCCATGGATTTTACCTCACTCTTGCGGCGAGGTTTGTGGAAGACCGCTGAAGCACAATTGCGGCCACCATTGTTTGCTTCTCTGCCACCCCGGGCCGTGCCCCTCTTGTCCCAAACTGGTTAAAGTTCGATGCTTTTGCGGGTGCCTTGAAGATGTTCGACGATGTGGCTTCAAGGAGTTTTCATGTAATAAACCCTGTTCCAAGTTTTTGGATTGTGGGGTTCACCGTTGCATTGAGCTTTGCCACCCTGGCGCTTGCCCTCCTTGCCGGACACGTGGCGTGTACACGTGCCGGTGTGGGAAGGTCAAGGAGGAGAGGGAGTGCTTTGATCGTGGTTTTCAGTGTGAGAATCCGTGTGAGAAGAGGCTTGGCTGTGGGAAGCATGTTTGTGAGAGAGGGTGCCATTCTGGTGAGTGTGGTGAGTGTCCCCTTAAGGGGAAGAGAACGTGCCCTTGTGGGAAAAGGGTTTATGAAGGAATGCCTTGTGATGCTCCTCTGCAGCTTTGTGGGGCTACCTGTGATAAGATGTTGCCCTGCGGCTACCACAGGTGCCCTGAGCGGTGCCACCGTGGGCAGTGCGTTGAGACTTGCAGGGTTGTTGTGAAGAAGTCTTGTCGATGCGGGAGCCTCAAGAAAGATGTTCCTTGCTATCAAGATTTGGCGTGCGAAAGGAAGTGTCAGAGGATGCGTGACTGCGGTCGACATGCTTGTAAGCGCCGCTGCTGTGATGGGGATTGCCCTCCTTGCTCTGAGATATGCGGCAGGAAGCTTCGATGTAAGAACCATAAATGTCCTTCTCCATGCCATAGAGGTCCTTGTGCTCCTTGCCCAATAATGGTGACAATTTCATGTGCATGTGGAGAGACACGTTTTGAGGTTCCATGTGGTACTGAAATGGACCAAAAGCCACCTAGATGTCCTAAGCCATGTCCTATCACTCCTTTATGCCGGCATGCATCAAATATCAAGCCACATAAATGCCATTATGGAGCCTGTCATCCTTGTCGCCTACCTTGTGCCGAAGAGTACCAATGTGGTCATACATGCAAATTAAGGTGTCATGGTGCTAGGCCTCCTCCTAATCCAGAGTTTTCTCTTAAACCAAAGAAAAAGAAGGTTATACAACAAAGTGAAGGTGTTCCTGGCACTCCATGCCCTCCTTGCCCAGAACTTGTGTGGAGATCATGTGCTGGGCAACACATTGGAGCTGAGAGAATGATGGTCTGCTCTGATAAATCACAGTTCTCCTGTGAAAATTTATGTGGTAATCCTCTACCATGTGCTAATCATTATTGTACAAAAACCTGCCATGCCTTGGAGAACCAGTTACAAGGGAGCGAACCTTGTGAAGACTGTTATCTTCCTTGCCAAAAGGAAAGAGAGCCAGCATGTCCACATCACTGCCCTAGGCGATGCCATCCTGAAGACTGTCCTCCATGCAAGGTGCTCATTAAACGGTCATGTCACTGTGGTGCGATGGTCCATGTGTTTGAGTGCCTATATTACAACAGCTTGTCTGCAAAGGGTCAAGAGACTGTCCGTTCATGTGGTGGGCCATGTCACAGAAAGTTGCCAAATTGTACACATCTATGCCCAGAGACATGTCATCCTGGTCAATGCCCAAATGCTGAGAAATGCTGTAAAAAGGTCACTGTTCGATGCAAATGCAAAACATTGAAAAAGGAGTGGGTTTGTCAAGATGTTCAAGCAGCATATCATCTTGCTGGTTGCCATCCAATGGATATTCCAAAAATTCAATTTGGAGTTGGACTCATTCCTTGCAATTCTGATTGTCAGAGTAAAGTGCAGGTTGTTGAGTCAGAACTACAGTTACGTAAAACTAGAGTTACAGAGGTGCAAGAGCCAGATGCAGAAAAATCAGTTCGGAAGCGGCGAAAAAGGCGGGAACAGGTTCTAGAATCCAAGGAAGCATCAAAACTACAGAAAATTATTTCCAGAATGAAGTGGCTTCTTCTATTTGTCTTTATTTTGGTCATACTTCTTGCTGCTACATATTATGGGTACAAGGGACTTTTATGGCTCAGTGATTGGATGAATGAAGTGGACGAACGAAGACAAATATATTCTCGAATCAAATGA 2616 0.5 MTSPWNKIHIHHSHPSPPPPPLLSDSDSDGGDSSSSAPLRHSDLSDSIFKPYLELSGHSGTDLSKIQSFLTSSSAGALSCLICLERIKPSDPTWSCSSLCFAVFHLFCIQSWARQASDLAAARAVTRLSISSASASDTALWNCPKCRSEYNKSHIPKTYFCFCGKIENPPNDPWILPHSCGEVCGRPLKHNCGHHCLLLCHPGPCPSCPKLVKVRCFCGCLEDVRRCGFKEFSCNKPCSKFLDCGVHRCIELCHPGACPPCRTRGVYTCRCGKVKEERECFDRGFQCENPCEKRLGCGKHVCERGCHSGECGECPLKGKRTCPCGKRVYEGMPCDAPLQLCGATCDKMLPCGYHRCPERCHRGQCVETCRVVVKKSCRCGSLKKDVPCYQDLACERKCQRMRDCGRHACKRRCCDGDCPPCSEICGRKLRCKNHKCPSPCHRGPCAPCPIMVTISCACGETRFEVPCGTEMDQKPPRCPKPCPITPLCRHASNIKPHKCHYGACHPCRLPCAEEYQCGHTCKLRCHGARPPPNPEFSLKPKKKKVIQQSEGVPGTPCPPCPELVWRSCAGQHIGAERMMVCSDKSQFSCENLCGNPLPCANHYCTKTCHALENQLQGSEPCEDCYLPCQKEREPACPHHCPRRCHPEDCPPCKVLIKRSCHCGAMVHVFECLYYNSLSAKGQETVRSCGGPCHRKLPNCTHLCPETCHPGQCPNAEKCCKKVTVRCKCKTLKKEWVCQDVQAAYHLAGCHPMDIPKIQFGVGLIPCNSDCQSKVQVVESELQLRKTRVTEVQEPDAEKSVRKRRKRREQVLESKEASKLQKIISRMKWLLLFVFILVILLAATYYGYKGLLWLSDWMNEVDERRQIYSRIK* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0240 871 CDD NF-X1-zinc-finger 341 390 - -
Gso18g0240 871 SUPERFAMILY RING/U-box 74 152 - -
Gso18g0240 871 MobiDBLite consensus disorder prediction 1 42 - -
Gso18g0240 871 SMART znfxneu3 517 562 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 297 316 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 599 626 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 351 371 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 192 210 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 404 423 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 636 654 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 431 450 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 699 721 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 244 263 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 SMART znfxneu3 488 509 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 CDD NF-X1-zinc-finger 180 228 - -
Gso18g0240 871 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 24 866 IPR034078 GO:0003700
Gso18g0240 871 CDD NF-X1-zinc-finger 287 334 - -
Gso18g0240 871 CDD NF-X1-zinc-finger 394 442 - -
Gso18g0240 871 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 24 866 - -
Gso18g0240 871 MobiDBLite consensus disorder prediction 27 42 - -
Gso18g0240 871 CDD NF-X1-zinc-finger 421 469 - -
Gso18g0240 871 CDD NF-X1-zinc-finger 234 282 - -
Gso18g0240 871 Pfam NF-X1 type zinc finger 425 449 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 351 370 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 517 526 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 498 508 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 244 262 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 404 422 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 599 609 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 297 315 IPR000967 GO:0005634|GO:0008270
Gso18g0240 871 Pfam NF-X1 type zinc finger 192 209 IPR000967 GO:0005634|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0240 Gso-Chr18 2080443 2095477 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Gso18g0240 zf-NF-X1 0.003 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0240 K15683 - gmx:100788262 1791.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0240 18 2080443 2095477 Gso18g0240 18 2080443 2095477 ECH
Gso18g0240 18 2080443 2095477 Gso13g1379 13 29298612 29306713 GST