Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0239 ATGGATTCTGAAATCGTTGAGAGCACTGACATGGCCGATATCACTGTTGATGCAAAGAGTTTTAGTTGGGCAGTGGACAGTGCGATAAAGAGTGAGACTGCGTCAATTTCGGGAGAATCCCGAATCCATAGTTTTTGTTCCGTAGTGGACAATGCCATAAGGAGTAGGACTGCATCAGATTTGGGAACATCTCCTTCTCCTGTCCATAGTCTTGCTTCGGCAGTGGCCAATGCAATGAGCAGCAGTAGTGCTGCACCATTTTCACAACTGGAAACGTCTCCTTCTCCTGTCCATAGTCTTGCTTCGGCAGTGCCCAGTGCAATGAGCAGGAGTAAAGCTGCACCATTTTCACAACTGGAAGTGGTGCCGAACGCCACTAGACATGTTCCTGCACGATTATTCACCTGGGCTGAGCTTAAAGCAGCCACCAACAATTTTTCACCTCACAACCTGATTCGTGATTTTGGAACCTTTGGCGTTGGGTACAGAGGCAAACTCGTTGATGGTCGTGAGGTCGCAATCGTTAAGGGAACCCAGTTTGGTAAGTCTGAATTTGCCATCTTTTCCCGTTTAGACCATAGGAACTTGGTTGGGCTTGTTGGGTACTGTGAAAACAGAGATGAAAGGCTGTCAGTGTATGAGTATATGAAGAATGGGTCGTTGCATGATTGCTTGCAAGATAAGAACAATGTGGACAAGGATAGCAGTGTGTTGAATTCGTGGAAAATGAGGATCAAGATTGCTTGCGATGCTTCCTTGGGAATACAATATCTGCATAATTATGCAAATCCATCTATTATTCACAGAGATATCAAGTCTTCCAATATTCTTCTTGATGCCAGTTGGACGGCTAGAGTATTTGATTTTGGATTGTCGTTCATATGTCCAGAACCTGACGATGAATACGATGATGAGAGAATAGTGGGAACCTACGCATACATGTGCCCTGAGTACAGGAATGGAGGTGTGTTGACAGCAAAGTGTGATGTGTACGGGCTTGGAGTTGTATTGCTTGAACTTTTAACGGGTAAGAGCGCTATACGCAATAATGAGAAAGATGTAGAACCCTCATTTTCTTTGGTGCACTTTGCAGTGCCTCGTATTTTGGCTGGAGATTTGGTCGAAATGTTGGATTCAAGGGTTGGACCACCCGATTTGAAAGAAGCAGAGGCACTGAAGATCCTGGCCTATACTGCTATATGTTGTGTGAAACGGAAAAGGAGGCATAGACCAACCATGAATGACATTGTGGTCAATTTGGATCGGGCTTTTGCTATTTGTGGTAGTAGCCTATATGGTGAGAACTTTTCCTATTCCAATGCATTACCATCACATGAGTCCAATCACATGAGTCCGTATCCTCTTCATTTAGAGGAATTTTTCACAAGACCTGAGAGTATTCCTCTCTCCTATTGGGATATTTATACGGATTCATGTGATATTCCAATCTACCAAGAGGATACGGACTCTGATAACTTTTCCTGCGGTACTATGTCGGACTTGGATATTCCAATCTACCAAGAGGATACGGACTCATATGATAACTTTTCCTGCGGTACTATGTCGGACTGGGATATTTCAGACTATTAA 1590 0.4384 MDSEIVESTDMADITVDAKSFSWAVDSAIKSETASISGESRIHSFCSVVDNAIRSRTASDLGTSPSPVHSLASAVANAMSSSSAAPFSQLETSPSPVHSLASAVPSAMSRSKAAPFSQLEVVPNATRHVPARLFTWAELKAATNNFSPHNLIRDFGTFGVGYRGKLVDGREVAIVKGTQFGKSEFAIFSRLDHRNLVGLVGYCENRDERLSVYEYMKNGSLHDCLQDKNNVDKDSSVLNSWKMRIKIACDASLGIQYLHNYANPSIIHRDIKSSNILLDASWTARVFDFGLSFICPEPDDEYDDERIVGTYAYMCPEYRNGGVLTAKCDVYGLGVVLLELLTGKSAIRNNEKDVEPSFSLVHFAVPRILAGDLVEMLDSRVGPPDLKEAEALKILAYTAICCVKRKRRHRPTMNDIVVNLDRAFAICGSSLYGENFSYSNALPSHESNHMSPYPLHLEEFFTRPESIPLSYWDIYTDSCDIPIYQEDTDSDNFSCGTMSDLDIPIYQEDTDSYDNFSCGTMSDWDISDY* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0239 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 266 278 IPR008271 GO:0004672|GO:0006468
Gso18g0239 529 ProSiteProfiles Protein kinase domain profile. 147 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0239 529 Gene3D Phosphorylase Kinase; domain 1 107 215 - -
Gso18g0239 529 SUPERFAMILY Protein kinase-like (PK-like) 123 418 IPR011009 -
Gso18g0239 529 Pfam Protein kinase domain 182 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0239 529 SMART serkin_6 146 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0239 529 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 124 432 IPR044815 GO:0004674
Gso18g0239 529 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 1 124 IPR044815 GO:0004674
Gso18g0239 529 Gene3D Transferase(Phosphotransferase) domain 1 216 427 - -
Gso18g0239 529 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 1 124 - -
Gso18g0239 529 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 124 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0239 Gso-Chr18 2078063 2086974 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0239 131 430 Receptor kinase-like Gene Family AT3G55950 55.763 1.62e-94 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso18g0239 Pkinase 3.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0239 - - gsj:114396534 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0239 18 2078063 2086974 Gso13g1383 13 29333443 29335008 GST